Substrate-induced double sided H-bond network as a means of domain closure in 3-phosphoglycerate kinase

被引:26
|
作者
Varga, Andrea
Flachner, Beáta
Konarev, Peter
Gráczer, va
Szabó, Judit
Svergun, Dmitri
Závodszky, Péter
Vas, Mária
机构
[1] Hungarian Acad Sci, Inst Enzymol, Biol Res Ctr, H-1518 Budapest, Hungary
[2] DESY, EMBL Outstn, Hamburg, Germany
[3] Russian Acad Sci, Inst Crystallog, Moscow 117333, Russia
来源
FEBS LETTERS | 2006年 / 580卷 / 11期
基金
匈牙利科学研究基金会;
关键词
domain movement; main hinge; substrate effects; phosphoglycerate kinase; small-angle x-ray scattering;
D O I
10.1016/j.febslet.2006.04.024
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Closure of the two domains of 3-phosphoglycerate kinase, upon substrate binding, is essential for the enzyme function. The available crystal structures cannot provide sufficient information about the mechanism of substrate assisted domain closure and about the requirement of only one or both substrates, since lattice forces may hinder the large scale domain movements. In this study the known X-ray data, obtained for the open and closed conformations, were probed by solution small-angle Xray scattering experiments. The results prove that binding of both substrates is essential for domain closure. Molecular graphical analysis, indeed, reveals formation of a double-sided H-bond network, which affects substantially the shape of the main molecular hinge at beta-strand L, under the concerted action of both substrates. (c) 2006 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved.
引用
收藏
页码:2698 / 2706
页数:9
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