Bioinformatics analysis of key genes and miRNAs associated with Stanford type A aortic dissection

被引:10
作者
Bi, Siwei [1 ]
Liu, Ruiqi [2 ]
Shen, Yinzhi [1 ]
Gu, Jun [3 ]
机构
[1] Sichuan Univ, West China Sch Med, Chengdu, Peoples R China
[2] Sichuan Univ, West China Hosp, Dept Burn & Plast Surg, Chengdu, Peoples R China
[3] Sichuan Univ, West China Hosp, Dept Cardiovasc Surg, Chengdu, Peoples R China
基金
中国国家自然科学基金;
关键词
Aortic dissection (AD); bioinformatics analysis; Gene Expression Omnibus (GEO) data; differentially expressed genes (DEGs); differentially expressed miRNAs (DEmiRNAs); SMOOTH-MUSCLE-CELL; R PACKAGE; EXPRESSION; KINASE; SWITCH;
D O I
10.21037/jtd-20-1337
中图分类号
R56 [呼吸系及胸部疾病];
学科分类号
摘要
Background: Aortic dissection is one of the most detrimental cardiovascular diseases with a high risk of mortality and morbidity. This study aimed to examine the key genes and microRNAs associated with Stanford type A aortic dissection (AAD). Methods: The expression data of AAD and healthy samples were downloaded from two microarray datasets in the Gene Expression Omnibus (GEO) database to identify highly preserved modules by weighted gene co-expression network analysis (WGCNA). Differentially expressed genes (DEGs) and differentially expressed miRNAs (DEmiRNAs) were selected and functionally annotated. The predicted interactions between the DEGs and DEmiRNAs were further illustrated. Results: In two highly preserved modules, 459 DEGs were identified. These DEGs were functionally enriched in the HIFI, Notch, and PI3K/Akt pathways. Furthermore, 6 DEmiRNAs that were enriched in the regulation of vasculature development and HIFI pathway, were predicted to target 23 DEGs. Conclusions: Our study presented several promising modulators, both DEGs and DEmiRNAs, as well as possible pathological pathways for AAD, which narrows the scope for further fundamental research.
引用
收藏
页码:4842 / +
页数:16
相关论文
共 36 条
[1]   The microRNA.org resource: targets and expression [J].
Betel, Doron ;
Wilson, Manda ;
Gabow, Aaron ;
Marks, Debora S. ;
Sander, Chris .
NUCLEIC ACIDS RESEARCH, 2008, 36 :D149-D153
[2]   A framework for oligonucleotide microarray preprocessing [J].
Carvalho, Benilton S. ;
Irizarry, Rafael A. .
BIOINFORMATICS, 2010, 26 (19) :2363-2367
[3]   Evolution of surgical therapy for Stanford acute type A aortic dissection [J].
Chiu, Peter ;
Miller, D. Craig .
ANNALS OF CARDIOTHORACIC SURGERY, 2016, 5 (04) :275-295
[4]   Notch Signaling in Ocular Vasculature Development and Diseases [J].
Dou, Guo-Rui ;
Wang, Lin ;
Wang, Yu-Sheng ;
Han, Hua .
MOLECULAR MEDICINE, 2012, 18 (01) :47-55
[5]   Acute aortic dissection [J].
Golledge, Jonathan ;
Eagle, Kim A. .
LANCET, 2008, 372 (9632) :55-66
[6]   GSVA: gene set variation analysis for microarray and RNA-Seq data [J].
Haenzelmann, Sonja ;
Castelo, Robert ;
Guinney, Justin .
BMC BIOINFORMATICS, 2013, 14
[7]   Endothelial Hypoxia-Inducible Factor-2 Is Required for the Maintenance of Airway Microvasculature [J].
Jiang, Xinguo ;
Tian, Wen ;
Tu, Allen B. ;
Pasupneti, Shravani ;
Shuffle, Eric ;
Dahms, Petra ;
Zhang, Patrick ;
Cai, Haoliang ;
Dinh, Thanh T. ;
Liu, Bo ;
Cain, Corey ;
Giaccia, Amato J. ;
Butcher, Eugene C. ;
Simon, M. Celeste ;
Semenza, Gregg L. ;
Nicolls, Mark R. .
CIRCULATION, 2019, 139 (04) :502-517
[8]   PI3K/AKT/mTOR pathway in angiogenesis [J].
Karar, Jayashree ;
Maity, Amit .
FRONTIERS IN MOLECULAR NEUROSCIENCE, 2011, 4
[9]  
Kassambara A, 2018, R PACKAGE VERSION 20
[10]   Gene expression profiling of acute type A aortic dissection combined with in vitro assessment [J].
Kimura, Naoyuki ;
Futamura, Kyoko ;
Arakawa, Mamoru ;
Okada, Naoko ;
Emrich, Fabian ;
Okamura, Homare ;
Sato, Tetsuya ;
Shudo, Yasuhiro ;
Koyano, Tiffany K. ;
Yamaguchi, Atsushi ;
Adachi, Hideo ;
Matsuda, Akio ;
Kawahito, Koji ;
Matsumoto, Kenji ;
Fischbein, Michael P. .
EUROPEAN JOURNAL OF CARDIO-THORACIC SURGERY, 2017, 52 (04) :810-817