Modeling Vibrational Spectra of Ester Carbonyl Stretch in Water and DMSO Based on Molecular Dynamics Simulation

被引:14
作者
Fang, Bin [1 ]
Wang, Tianjun [2 ]
Chen, Xian [3 ]
Jin, Tan [1 ]
Zhang, Ruiting [1 ]
Zhuang, Wei [1 ]
机构
[1] Chinese Acad Sci, Dalian Inst Chem Phys, State Key Lab Mol React Dynam, Dalian 116023, Liaoning, Peoples R China
[2] ShanghaiTech Univ, Dept Chem, Shanghai 200031, Peoples R China
[3] Jilin Univ, Dept Phys, Minist Educ, Key Lab Phys & Technol Adv Batteries, Changchun 130012, Peoples R China
基金
中国国家自然科学基金;
关键词
ULTRAFAST INFRARED-SPECTROSCOPY; PARTICLE MESH EWALD; 2D IR SPECTROSCOPY; HYDROPHOBIC INTERACTIONS; N-METHYLACETAMIDE; AQUEOUS-SOLUTIONS; MECHANISM; PROBE; CHANNEL; MODES;
D O I
10.1021/acs.jpcb.5b06541
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
On the basis of molecular dynamics simulation, we model the ester carbonyl stretch FTIR signals of methyl acetate in D2O and DMSO. An ab initio map is constructed at the B3LYP/6-311++G** level to relate the carbonyl stretch frequency to the external electric field. Using this map, fluctuating Hamiltonian of the carbonyl stretch is constructed from the MD simulation trajectory. The IR spectra calculated based on this Hamiltonian are found to be in good agreement with the experiment. For methyl acetate in D2O, hydrogen bonding on alkoxy oxygen causes a blue shift of frequency, while that on carbonyl oxygen causes a red shift. Two peaks observed in FTIR signals originate from the balance of these two effects. Furthermore, in both D2O and DMSO solutions, correlations are found between the instantaneous electric field on C=O and the frequencies. Broader line width of the signal in D2O suggests a more inhomogeneous electric field distribution due to the complicated hydrogen-bonding environment.
引用
收藏
页码:12390 / 12396
页数:7
相关论文
共 55 条
[1]   A Solvatochromic Model Calibrates Nitriles' Vibrational Frequencies to Electrostatic Fields [J].
Bagchi, Sayan ;
Fried, Stephen D. ;
Boxer, Steven G. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2012, 134 (25) :10373-10376
[2]   Structural Disorder of Folded Proteins: Isotope-Edited 2D IR Spectroscopy and Markov State Modeling [J].
Baiz, Carlos R. ;
Tokmakoff, Andrei .
BIOPHYSICAL JOURNAL, 2015, 108 (07) :1747-1757
[3]   MOLECULAR-DYNAMICS WITH COUPLING TO AN EXTERNAL BATH [J].
BERENDSEN, HJC ;
POSTMA, JPM ;
VANGUNSTEREN, WF ;
DINOLA, A ;
HAAK, JR .
JOURNAL OF CHEMICAL PHYSICS, 1984, 81 (08) :3684-3690
[4]   Ion clustering in aqueous solutions probed with vibrational energy transfer [J].
Bian, Hongtao ;
Wen, Xiewen ;
Li, Jiebo ;
Chen, Hailong ;
Han, Suzee ;
Sun, Xiuquan ;
Song, Jian ;
Zhuang, Wei ;
Zheng, Junrong .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2011, 108 (12) :4737-4742
[5]   Empirical modeling of the peptide amide I band IR intensity in water solution [J].
Bour, P ;
Keiderling, TA .
JOURNAL OF CHEMICAL PHYSICS, 2003, 119 (21) :11253-11262
[6]   Stark Realities [J].
Boxer, Steven G. .
JOURNAL OF PHYSICAL CHEMISTRY B, 2009, 113 (10) :2972-2983
[7]   Structural motif of polyglutamine amyloid fibrils discerned with mixed-isotope infrared spectroscopy [J].
Buchanan, Lauren E. ;
Carr, Joshua K. ;
Fluitt, Aaron M. ;
Hoganson, Andrew J. ;
Moran, Sean D. ;
de Pablo, Juan J. ;
Skinner, James L. ;
Zanni, Martin T. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2014, 111 (16) :5796-5801
[8]   Chemical Equilibrium Probed by Two-Dimensional IR Spectroscopy: Hydrogen Bond Dynamics of Methyl Acetate in Water [J].
Candelaresi, Marco ;
Pagliai, Marco ;
Lima, Manuela ;
Righini, Roberto .
JOURNAL OF PHYSICAL CHEMISTRY A, 2009, 113 (46) :12783-12790
[9]   Correlation between electronic and molecular structure distortions and vibrational properties. I. Adiabatic approximations [J].
Cho, MH .
JOURNAL OF CHEMICAL PHYSICS, 2003, 118 (08) :3480-3490
[10]   Kinetics of Exchange between Zero-, One-, and Two-Hydrogen-Bonded States of Methyl and Ethyl Acetate in Methanol [J].
Chuntonov, Lev ;
Pazos, Ileana M. ;
Ma, Jianqiang ;
Gai, Feng .
JOURNAL OF PHYSICAL CHEMISTRY B, 2015, 119 (12) :4512-4520