Novel Parallelized Quadrupole/Linear Ion Trap/Orbitrap Tribrid Mass Spectrometer Improving Proteome Coverage and Peptide Identification Rates

被引:178
作者
Senko, Michael W. [1 ]
Remes, Philip M. [1 ]
Canterbury, Jesse D. [1 ]
Mathur, Raman [1 ]
Song, Qingyu [1 ]
Eliuk, Shannon M. [1 ]
Mullen, Chris [1 ]
Earley, Lee [1 ]
Hardman, Mark [1 ]
Blethrow, Justin D. [1 ]
Bui, Huy [1 ]
Specht, August [1 ]
Lange, Oliver [2 ]
Denisov, Eduard [2 ]
Makarov, Alexander [2 ]
Horning, Stevan [2 ]
Zabrouskov, Vlad [1 ]
机构
[1] Thermo Fisher Sci, San Jose, CA 95134 USA
[2] Thermo Fisher Sci Bremen GmbH, D-28199 Bremen, Germany
关键词
ELECTRON-TRANSFER DISSOCIATION; PERFORMANCE EVALUATION; PEAK-CAPACITY; QUANTIFICATION; NUMBER;
D O I
10.1021/ac403115c
中图分类号
O65 [分析化学];
学科分类号
070302 ; 081704 ;
摘要
Proteome coverage and peptide identification rates have historically advanced in line with improvements to the detection limits and acquisition rate of the mass spectrometer. For a linear ion trap/Orbitrap hybrid, the acquisition rate has been limited primarily by the duration of the ion accumulation and analysis steps. It is shown here that the spectral acquisition rate can be significantly improved through extensive parallelization of the acquisition process using a novel mass spectrometer incorporating quadrupole, Orbitrap, and linear trap analyzers. Further, these improvements to the acquisition rate continue to enhance proteome coverage and general experimental throughput.
引用
收藏
页码:11710 / 11714
页数:5
相关论文
共 42 条
  • [1] Robust and sensitive iTRAQ quantification on an LTQ orbitrap mass spectrometer
    Bantscheff, Marcus
    Boesche, Markus
    Eberhard, Dirk
    Matthieson, Toby
    Sweetman, Gavain
    Kuster, Bernhard
    [J]. MOLECULAR & CELLULAR PROTEOMICS, 2008, 7 (09) : 1702 - 1713
  • [2] Canterbury J. D., 2013, P 61 ASMS C MASS SPE
  • [3] Role of accurate mass measurement (±10 ppm) in protein identification strategies employing MS or MS MS and database searching
    Clauser, KR
    Baker, P
    Burlingame, AL
    [J]. ANALYTICAL CHEMISTRY, 1999, 71 (14) : 2871 - 2882
  • [4] Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast
    de Godoy, Lyris M. F.
    Olsen, Jesper V.
    Cox, Juergen
    Nielsen, Michael L.
    Hubner, Nina C.
    Froehlich, Florian
    Walther, Tobias C.
    Mann, Matthias
    [J]. NATURE, 2008, 455 (7217) : 1251 - U60
  • [5] Douglas DJ, 1993, US Patent, Patent No. [5179278, 5,179,278]
  • [6] Front-End Electron Transfer Dissociation: A New Ionization Source
    Earley, Lee
    Anderson, Lissa C.
    Bai, Dina L.
    Mullen, Christopher
    Syka, John E. P.
    English, A. Michelle
    Dunyach, Jean-Jacques
    Stafford, George C., Jr.
    Shabanowitz, Jeffrey
    Hunt, Donald F.
    Compton, Philip D.
    [J]. ANALYTICAL CHEMISTRY, 2013, 85 (17) : 8385 - 8390
  • [7] AN APPROACH TO CORRELATE TANDEM MASS-SPECTRAL DATA OF PEPTIDES WITH AMINO-ACID-SEQUENCES IN A PROTEIN DATABASE
    ENG, JK
    MCCORMACK, AL
    YATES, JR
    [J]. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 1994, 5 (11) : 976 - 989
  • [8] Infrared Multiphoton Dissociation of Peptide Cations in a Dual Pressure Linear Ion Trap Mass Spectrometer
    Gardner, Myles W.
    Smith, Suncerae I.
    Ledvina, Aaron R.
    Madsen, James A.
    Coon, Joshua J.
    Schwartz, Jae C.
    Stafford, George C., Jr.
    Brodbelt, Jennifer S.
    [J]. ANALYTICAL CHEMISTRY, 2009, 81 (19) : 8109 - 8118
  • [9] Gerlich D., 1992, ADV CHEM PHYS SERIES, VLXXXII
  • [10] FILTERED NOISE FIELD SIGNALS FOR MASS-SELECTIVE ACCUMULATION OF EXTERNALLY FORMED IONS IN A QUADRUPOLE ION-TRAP
    GOERINGER, DE
    ASANO, KG
    MCLUCKEY, SA
    HOEKMAN, D
    STILLER, SW
    [J]. ANALYTICAL CHEMISTRY, 1994, 66 (03) : 313 - 318