A Revised Taxonomy of Diplonemids Including the Eupelagonemidae n. fam. and a Type Species, Eupelagonema oceanica n. gen. & sp.

被引:18
作者
Okamoto, Noriko [1 ]
Gawryluk, Ryan M. R. [1 ]
del Campo, Javier [1 ]
Strassert, Jurgen F. H. [1 ]
Lukes, Julius [2 ]
Richards, Thomas A. [3 ]
Worden, Alexandra Z. [4 ]
Santoro, Alyson E. [5 ]
Keeling, Patrick J. [1 ]
机构
[1] Univ British Columbia, Dept Bot, 3529-6270 Univ Blvd, Vancouver, BC, Canada
[2] Univ South Bohemia, Fac Sci, Czech Acad Sci, Inst Parasitol,Biol Ctr, Branisovska 31, Ceske Budejovice 37005, Budweis, Czech Republic
[3] Univ Exeter, Biosci, Geoffrey Pope Bldg, Exeter EX4 4QD, Devon, England
[4] Monterey Bay Aquarium Res Inst, Moss Landing, CA 95039 USA
[5] Univ Calif Santa Barbara, Dept Ecol Evolut & Marine Biol, Santa Barbara, CA 93106 USA
关键词
Deep-sea pelagic diplonemids; euglenozoa; heterotrophic flagellate; kinetoplastids; marine diplonemids; single-cell amplified genome; MARINE PROTISTS; EUKARYOTES; PHYLOGENY; DIVERSITY; MORPHOLOGY; GENOMICS; TOOL; NOV;
D O I
10.1111/jeu.12679
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Recent surveys of marine microbial diversity have identified a previously unrecognized lineage of diplonemid protists as being among the most diverse heterotrophic eukaryotes in global oceans. Despite their monophyly (and assumed importance), they lack a formal taxonomic description, and are informally known as deep-sea pelagic diplonemids (DSPDs) or marine diplonemids. Recently, we documented morphology and molecular sequences from several DSPDs, one of which is particularly widespread and abundant in environmental sequence data. To simplify the communication of future work on this important group, here we formally propose to erect the family Eupelagonemidae to encompass this clade, as well as a formal genus and species description for the apparently most abundant phylotype, Eupelagonema oceanica, for which morphological information and single-cell amplified genome data are currently available.
引用
收藏
页码:519 / 524
页数:6
相关论文
共 40 条
[31]   Large-scale patterns in biodiversity of microbial eukaryotes from the abyssal sea floor [J].
Scheckenbach, Frank ;
Hausmann, Klaus ;
Wylezich, Claudia ;
Weitere, Markus ;
Arndt, Hartmut .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2010, 107 (01) :115-120
[32]   LIGHT AND ELECTRON-MICROSCOPIC OBSERVATIONS IN RHYNCHOPUS-COSCINODISCIVORUS SPEC NOV, A COLORLESS, PHAGOTROPHIC EUGLENOZOON WITH CONCEALED FLAGELLA [J].
SCHNEPF, E .
ARCHIV FUR PROTISTENKUNDE, 1994, 144 (01) :63-74
[33]   The identity and composition of the Euglenozoa [J].
Simpson, AGB .
ARCHIV FUR PROTISTENKUNDE, 1997, 148 (03) :318-328
[34]   RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies [J].
Stamatakis, Alexandros .
BIOINFORMATICS, 2014, 30 (09) :1312-1313
[35]  
TASHYREVA D, 2018, LIFE, V9, pe0244, DOI DOI 10.1128/MBIO.02447-17
[36]   Phylogeny and Morphology of New Diplonemids from Japan [J].
Tashyreva, Daria ;
Prokopchuk, Galina ;
Yabuki, Akinori ;
Kaur, Binnypreet ;
Faktorova, Drahomira ;
Votypka, Jan ;
Kusaka, Chiho ;
Fujikura, Katsunori ;
Shiratori, Takashi ;
Ishida, Ken-Ichiro ;
Horak, Ales ;
Lukes, Julius .
PROTIST, 2018, 169 (02) :158-179
[37]   ULTRASTRUCTURE OF DIPLONEMA-AMBULATOR LARSEN AND PATTERSON (EUGLENOZOA) AND ITS RELATIONSHIP TO ISONEMA [J].
TRIEMER, RE ;
OTT, DW .
EUROPEAN JOURNAL OF PROTISTOLOGY, 1990, 25 (04) :316-320
[38]   Post-transcriptional mending of gene sequences: Looking under the hood of mitochondrial gene expression in diplonemids [J].
Valach, Matus ;
Moreira, Sandrine ;
Faktorova, Drahomira ;
Lukes, Julius ;
Burger, Gertraud .
RNA BIOLOGY, 2016, 13 (12) :1204-1211
[39]  
Yabuki Akinori, 2016, Genome Biol Evol, V8, P2870
[40]   Phylogeny and Reclassification of Hemistasia phaeocysticola (Scherffel) Elbrachter & Schnepf, 1996 [J].
Yabuki, Akinori ;
Tame, Akihiro .
JOURNAL OF EUKARYOTIC MICROBIOLOGY, 2015, 62 (03) :426-429