Survival Prediction of Glioma Patients from Integrated Radiology and Pathology Images Using Machine Learning Ensemble Regression Methods

被引:6
作者
Rathore, Faisal Altaf [1 ]
Khan, Hafiz Saad [2 ]
Ali, Hafiz Mudassar [3 ]
Obayya, Marwa [4 ]
Rasheed, Saim [5 ]
Hussain, Lal [1 ,6 ]
Kazmi, Zaki Hassan [1 ]
Nour, Mohamed K. [7 ]
Mohamed, Abdullah [8 ]
Motwakel, Abdelwahed [9 ]
机构
[1] Univ Azad Jammu & Kashmir, Dept Comp Sci & Informat Technol, Muzaffarabad 13100, Azad Kashmir, Pakistan
[2] Kidney Ctr Bahawal Victoria Hosp Bahawalpur, Bahawalpur 63100, Victoria, Pakistan
[3] Rural Hlth Ctr RHC Roda, Khushab 41021, Punjab, Pakistan
[4] Princess Nourah Bint Abdulrahman Univ, Coll Engn, Dept Biomed Engn, Riyadh 11671, Saudi Arabia
[5] King Abdulaziz Univ, Fac Comp & IT, Dept Informat Technol, Jeddah 21589, Saudi Arabia
[6] Univ Azad Jammu & Kashmir, Dept Comp Sci & IT, Neelum Campus, Athmuqam 13230, Azad Kashmir, Pakistan
[7] Umm Al Qura Univ, Coll Comp & Informat Syst, Dept Comp Sci, Mecca 24382, Saudi Arabia
[8] Future Univ Egypt, Res Ctr, New Cairo 11845, Egypt
[9] Prince Sattam Bin Abdulaziz Univ, Dept Comp & Self Dev, Preparatory Year Deanship, Al Kharj 16278, Saudi Arabia
来源
APPLIED SCIENCES-BASEL | 2022年 / 12卷 / 20期
关键词
survival prediction; radiology images (rad); digital pathology images (path); magnetic resonance imaging (MRI); whole slide images (WSI); region of interest (ROI); glioblastoma (GBM); low grade glioma (LGG); high grade glioma (HGG); grey matter; machine learning algorithms; support vector regression (SVR); ensemble regression analysis; CLASSIFICATION; GLIOBLASTOMA; DESCRIPTORS; CANCER;
D O I
10.3390/app122010357
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Gliomas are tumors of the central nervous system, which usually start within the glial cells of the brain or the spinal cord. These are extremely migratory and diffusive tumors, which quickly expand to the surrounding regions in the brain. There are different grades of gliomas, hinting about their growth patterns and aggressiveness and potential response to the treatment. As part of routine clinical procedure for gliomas, both radiology images (rad), such as multiparametric MR images, and digital pathology images (path) from tissue samples are acquired. Each of these data streams are used separately for prediction of the survival outcome of gliomas, however, these images provide complimentary information, which can be used in an integrated way for better prediction. There is a need to develop an image-based method that can utilise the information extracted from these imaging sequences in a synergistic way to predict patients' outcome and to potentially assist in building comprehensive and patient-centric treatment plans. The objective of this study is to improve survival prediction outcomes of gliomas by integrating radiology and pathology imaging. Multiparametric magnetic resonance imaging (MRI), rad images, and path images of glioma patients were acquired from The Cancer Imaging Archive. Quantitative imaging features were extracted from tumor regions in rad and path images. The features were given as input to an ensemble regression machine learning pipeline, including support vector regression, AdaBoost, gradient boost, and random forest. The performance of the model was evaluated in several configurations, including leave-one-out, fivefold cross-validation, and split-train-test. Moreover, the quantitative performance evaluations were conducted separately in the complete cohort (n = 171), high-grade gliomas (HGGs), n = 75, and low-grade gliomas (LGGs), n = 96. The combined rad and path features outperformed individual feature types in all the configurations and datasets. In leave-one-out configuration, the model comprising both rad and path features was successfully validated on the complete dataset comprising HGFs and LGGs (R = 0.84 p = 2.2 x 10(-16)). The Kaplan-Meier curves generated on the predictions of the proposed model yielded a hazard ratio of 3.314 [95%CI : 1.718 - 6.394], log - rank(P) = 2 x 10(-4) on combined rad and path features. Conclusion: The proposed approach emphasizes radiology experts and pathology experts' clinical workflows by creating prognosticators upon 'rad' radiology images and digital pathology 'path' images independently, as well as combining the power of both, also through delivering integrated analysis, that can contribute to a collaborative attempt between different departments for administration of patients with gliomas.
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页数:15
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