HACANCOi: a new Hα-detected experiment for backbone resonance assignment of intrinsically disordered proteins

被引:9
|
作者
Karjalainen, Mikael [1 ]
Tossavainen, Helena [2 ]
Hellman, Maarit [2 ]
Permi, Perttu [1 ,2 ]
机构
[1] Univ Jyvaskyla, Nanosci Ctr, Dept Chem, Jyvaskyla, Finland
[2] Univ Jyvaskyla, Dept Biol & Environm Sci, Jyvaskyla, Finland
关键词
E; coli; EspF; GB1; Intrinsically disordered protein; IDP; Resonance assignment; SNX9; SH3; CHEMICAL-SHIFT ASSIGNMENTS; NMR-SPECTROSCOPY; C-13; SCHEME; N-15; DISPERSION; EXTENSION; SPECTRA; BINDING; DOMAIN;
D O I
10.1007/s10858-020-00347-5
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Unidirectional coherence transfer is highly efficient in intrinsically disordered proteins (IDPs). Their elevated ps-ns timescale dynamics ensures long transverse (T-2) relaxation times allowing sophisticated coherence transfer pathway selection in comparison to folded proteins. H-1(alpha)-detection ensures non-susceptibility to chemical exchange with the solvent and enables chemical shift assignment of consecutive proline residues, typically abundant in IDPs. However, many IDPs undergo a disorder-to-order transition upon interaction with their target protein, which leads to the loss of the favorable relaxation properties. Long coherence transfer routes now result in prohibitively large decrease in sensitivity. We introduce a novel 4D H-1(alpha)-detected experiment HACANCOi, together with its 3D implementation, which warrant high sensitivity for the assignment of proline-rich regions in IDPs in complex with a globular protein. The experiment correlates H-1(i)alpha, C-13(i)alpha, N-15(i) and 13Ci ' spins by transferring the magnetization concomitantly from C-13(i)alpha to N-15(i) and 13Ci '. The B1 domain of protein G (GB1), and the enteropathogenic E.coli EspF in complex with human SNX9 SH3, serve as model systems to demonstrate the attainable sensitivity and successful sequential assignment.
引用
收藏
页码:741 / 752
页数:12
相关论文
共 50 条
  • [1] HACANCOi: a new Hα-detected experiment for backbone resonance assignment of intrinsically disordered proteins
    Mikael Karjalainen
    Helena Tossavainen
    Maarit Hellman
    Perttu Permi
    Journal of Biomolecular NMR, 2020, 74 : 741 - 752
  • [2] HA-detected experiments for the backbone assignment of intrinsically disordered proteins
    Mantylahti, Sampo
    Aitio, Olli
    Hellman, Maarit
    Permi, Perttu
    JOURNAL OF BIOMOLECULAR NMR, 2010, 47 (03) : 171 - 181
  • [3] HA-detected experiments for the backbone assignment of intrinsically disordered proteins
    Sampo Mäntylahti
    Olli Aitio
    Maarit Hellman
    Perttu Permi
    Journal of Biomolecular NMR, 2010, 47 : 171 - 181
  • [4] New 13C-detected experiments for the assignment of intrinsically disordered proteins
    Pantoja-Uceda, David
    Santoro, Jorge
    JOURNAL OF BIOMOLECULAR NMR, 2014, 59 (01) : 43 - 50
  • [5] New 13C-detected experiments for the assignment of intrinsically disordered proteins
    David Pantoja-Uceda
    Jorge Santoro
    Journal of Biomolecular NMR, 2014, 59 : 43 - 50
  • [6] High dimensional and high resolution pulse sequences for backbone resonance assignment of intrinsically disordered proteins
    Zawadzka-Kazimierczuk, Anna
    Kozminski, Wiktor
    Sanderova, Hana
    Krasny, Libor
    JOURNAL OF BIOMOLECULAR NMR, 2012, 52 (04) : 329 - 337
  • [7] High dimensional and high resolution pulse sequences for backbone resonance assignment of intrinsically disordered proteins
    Anna Zawadzka-Kazimierczuk
    Wiktor Koźmiński
    Hana Šanderová
    Libor Krásný
    Journal of Biomolecular NMR, 2012, 52 : 329 - 337
  • [8] Dispersion from Cα or NH: 4D experiments for backbone resonance assignment of intrinsically disordered proteins
    Helena Tossavainen
    Santeri Salovaara
    Maarit Hellman
    Riikka Ihalin
    Perttu Permi
    Journal of Biomolecular NMR, 2020, 74 : 147 - 159
  • [9] Dispersion from Cα or NH: 4D experiments for backbone resonance assignment of intrinsically disordered proteins
    Tossavainen, Helena
    Salovaara, Santeri
    Hellman, Maarit
    Ihalin, Riikka
    Permi, Perttu
    JOURNAL OF BIOMOLECULAR NMR, 2020, 74 (2-3) : 147 - 159
  • [10] A NEW TRIPLE-RESONANCE EXPERIMENT FOR THE SEQUENTIAL ASSIGNMENT OF BACKBONE RESONANCES IN PROTEINS
    LOHR, F
    RUTERJANS, H
    JOURNAL OF BIOMOLECULAR NMR, 1995, 6 (02) : 189 - 197