Describing sequence-ensemble relationships for intrinsically disordered proteins

被引:89
作者
Mao, Albert H. [1 ,2 ]
Lyle, Nicholas [3 ]
Pappu, Rohit V. [4 ,5 ]
机构
[1] Washington Univ, Med Scientist Training Program, St Louis, MO 63130 USA
[2] Washington Univ, Computat & Mol Biophys Program, St Louis, MO 63130 USA
[3] Washington Univ, Computat & Syst Biol Program, St Louis, MO 63130 USA
[4] Washington Univ, Dept Biomed Engn, St Louis, MO 63130 USA
[5] Washington Univ, Ctr Biol Syst Engn, St Louis, MO 63130 USA
基金
美国国家科学基金会; 美国国家卫生研究院;
关键词
intrinsically disordered protein; polymer physics; sequence-ensemble relationship; TO-COIL TRANSITION; NUCLEAR-MAGNETIC-RESONANCE; NATIVELY UNFOLDED PROTEINS; PARTIALLY FOLDED PROTEINS; TUMOR-SUPPRESSOR P53; RNA-POLYMERASE-II; X-RAY-SCATTERING; UNSTRUCTURED PROTEINS; CHEMICAL-SHIFTS; STRUCTURAL DISORDER;
D O I
10.1042/BJ20121346
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Intrinsically disordered proteins participate in important protein-protein and protein-nucleic acid interactions and control cellular phenotypes through their prominence as dynamic organizers of transcriptional, post-transcriptional and signalling networks. These proteins challenge the tenets of the structure-function paradigm and their functional mechanisms remain a mystery given that they fail to fold autonomously into specific structures. Solving this mystery requires a first principles understanding of the quantitative relationships between information encoded in the sequences of disordered proteins and the ensemble of conformations they sample. Advances in quantifying sequence-ensemble relationships have been facilitated through a four-way synergy between bioinformatics, biophysical experiments, computer simulations and polymer physics theories. In the present review we evaluate these advances and the resultant insights that allow us to develop a concise quantitative framework for describing the sequence-ensemble relationships of intrinsically disordered proteins.
引用
收藏
页码:307 / 318
页数:12
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