Bridging the clinical gaps: genetic, epigenetic and transcriptomic biomarkers for the early detection of lung cancer in the post-National Lung Screening Trial era

被引:43
作者
Brothers, John F. [1 ,2 ]
Hijazi, Kahkeshan [1 ,2 ]
Mascaux, Celine [3 ]
El-Zein, Randa A. [4 ]
Spitz, Margaret R. [4 ]
Spira, Avrum [1 ,2 ]
机构
[1] Boston Univ, Bioinformat Program, Boston, MA 02215 USA
[2] Boston Univ, Sch Med, Dept Med, Sect Computat Biomed, Boston, MA 02118 USA
[3] Univ Toronto, Univ Hlth Network, Dept Med Oncol, Princess Margaret Canc Ctr, Toronto, ON, Canada
[4] Baylor Coll Med, Dan L Duncan Canc Ctr, Houston, TX 77030 USA
关键词
Biomarker; Diagnostics; Early detection; Epigenetics; Genetics; Lung cancer; Screening; Transcriptomics; GENOME-WIDE ASSOCIATION; ABERRANT PROMOTER METHYLATION; OBSTRUCTIVE PULMONARY-DISEASE; TUMOR-SUPPRESSOR GENES; PLASMA DNA; SUSCEPTIBILITY LOCI; PERIPHERAL-BLOOD; SERUM DNA; RISK PREDICTION; BRONCHIAL EPITHELIUM;
D O I
10.1186/1741-7015-11-168
中图分类号
R5 [内科学];
学科分类号
1002 ; 100201 ;
摘要
Lung cancer is the leading cause of cancer death worldwide in part due to our inability to identify which smokers are at highest risk and the lack of effective tools to detect the disease at its earliest and potentially curable stage. Recent results from the National Lung Screening Trial have shown that annual screening of high-risk smokers with low-dose helical computed tomography of the chest can reduce lung cancer mortality. However, molecular biomarkers are needed to identify which current and former smokers would benefit most from annual computed tomography scan screening in order to reduce the costs and morbidity associated with this procedure. Additionally, there is an urgent clinical need to develop biomarkers that can distinguish benign from malignant lesions found on computed tomography of the chest given its very high false positive rate. This review highlights recent genetic, transcriptomic and epigenomic biomarkers that are emerging as tools for the early detection of lung cancer both in the diagnostic and screening setting.
引用
收藏
页数:15
相关论文
共 124 条
[1]   Reduced Lung-Cancer Mortality with Low-Dose Computed Tomographic Screening [J].
Aberle, Denise R. ;
Adams, Amanda M. ;
Berg, Christine D. ;
Black, William C. ;
Clapp, Jonathan D. ;
Fagerstrom, Richard M. ;
Gareen, Ilana F. ;
Gatsonis, Constantine ;
Marcus, Pamela M. ;
Sicks, JoRean D. .
NEW ENGLAND JOURNAL OF MEDICINE, 2011, 365 (05) :395-409
[2]   Utility of serum DNA and pyrosequencing for the detection of EGFR mutations in non-small cell lung cancer [J].
Akca, Hakan ;
Demiray, Aydin ;
Yaren, Arzu ;
Bir, Ferda ;
Koseler, Aylin ;
Iwakawa, Reika ;
Bagci, Gulseren ;
Yokota, Jun .
CANCER GENETICS, 2013, 206 (03) :73-80
[3]   Genome-wide association scan of tag SNPs identifies a susceptibility locus for lung cancer at 15q25.1 [J].
Amos, Christopher I. ;
Wu, Xifeng ;
Broderick, Peter ;
Gorlov, Ivan P. ;
Gu, Jian ;
Eisen, Timothy ;
Dong, Qiong ;
Zhang, Qing ;
Gu, Xiangjun ;
Vijayakrishnan, Jayaram ;
Sullivan, Kate ;
Matakidou, Athena ;
Wang, Yufei ;
Mills, Gordon ;
Doheny, Kimberly ;
Tsai, Ya-Yu ;
Chen, Wei Vivien ;
Shete, Sanjay ;
Spitz, Margaret R. ;
Houlston, Richard S. .
NATURE GENETICS, 2008, 40 (05) :616-622
[4]   Variations in lung cancer risk among smokers [J].
Bach, PB ;
Kattan, MW ;
Thornquist, MD ;
Kris, MG ;
Tate, RC ;
Barnett, MJ ;
Hsieh, LJ ;
Begg, CB .
JNCI-JOURNAL OF THE NATIONAL CANCER INSTITUTE, 2003, 95 (06) :470-478
[5]   Replication of results of genome-wide association studies on lung cancer susceptibility loci in a Korean population [J].
Bae, Eun Young ;
Lee, Shin Yup ;
Kang, Bong Kyoon ;
Lee, Eun Jin ;
Choi, Yi Young ;
Kang, Hyo-Gyoung ;
Choi, Jin Eun ;
Jeon, Hyo-Sung ;
Lee, Won Kee ;
Kam, Shin ;
Shin, Kyung Min ;
Jin, Guang ;
Yoo, Seung Soo ;
Lee, Jaehee ;
Cha, Seung Ick ;
Kim, Chang Ho ;
Jung, Tae Hoon ;
Park, Jae Yong .
RESPIROLOGY, 2012, 17 (04) :699-706
[6]   A Prediction Model for Lung Cancer Diagnosis that Integrates Genomic and Clinical Features [J].
Beane, Jennifer ;
Sebastiani, Paola ;
Whitfield, Theodore H. ;
Steiling, Katrina ;
Dumas, Yves-Martine ;
Lenburg, Marc E. ;
Spira, Avrum .
CANCER PREVENTION RESEARCH, 2008, 1 (01) :56-64
[7]   Characterizing the Impact of Smoking and Lung Cancer on the Airway Transcriptome Using RNA-Seq [J].
Beane, Jennifer ;
Vick, Jessica ;
Schembri, Frank ;
Anderlind, Christina ;
Gower, Adam ;
Campbell, Joshua ;
Luo, Lingqi ;
Zhang, Xiao Hui ;
Xiao, Ji ;
Alekseyev, Yuriy O. ;
Wang, Shenglong ;
Levy, Shawn ;
Massion, Pierre P. ;
Lenburg, Marc ;
Spira, Avrum .
CANCER PREVENTION RESEARCH, 2011, 4 (06) :803-817
[8]   An Epigenetic Marker Panel for Detection of Lung Cancer Using Cell-Free Serum DNA [J].
Begum, Shahnaz ;
Brait, Mariana ;
Dasgupta, Santanu ;
Ostrow, Kimberly L. ;
Zahurak, Marianna ;
Carvalho, Andre L. ;
Califano, Joseph A. ;
Goodman, Steven N. ;
Westra, William H. ;
Hoque, Mohammad Obaidul ;
Sidransky, David .
CLINICAL CANCER RESEARCH, 2011, 17 (13) :4494-4503
[9]   Promoter hypermethylation of multiple genes in sputum precedes lung cancer incidence in a high-risk cohort [J].
Belinsky, SA ;
Liechty, KC ;
Gentry, FD ;
Wolf, HJ ;
Rogers, J ;
Vu, K ;
Haney, J ;
Kenned, TC ;
Hirsch, FR ;
Miller, Y ;
Franklin, WA ;
Herman, JG ;
Baylin, SB ;
Bunn, PA ;
Byers, T .
CANCER RESEARCH, 2006, 66 (06) :3338-3344
[10]   Gene promoter methylation in plasma and sputum increases with lung cancer risk [J].
Belinsky, SA ;
Klinge, DM ;
Dekker, JD ;
Smith, MW ;
Bocklage, TJ ;
Gilliland, FD ;
Crowell, RE ;
Karp, DD ;
Stidley, CA ;
Picchi, MA .
CLINICAL CANCER RESEARCH, 2005, 11 (18) :6505-6511