Diversity, expansion, and evolutionary novelty of plant DNA-binding transcription factor families

被引:91
作者
Lehti-Shiu, Melissa D. [1 ]
Panchy, Nicholas [2 ]
Wang, Peipei [1 ]
Uygun, Sahra [2 ]
Shiu, Shin-Han [1 ,2 ]
机构
[1] Dept Plant Biol, E Lansing, MI 48824 USA
[2] Michigan State Univ, Grad Program Genet, E Lansing, MI 48824 USA
来源
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS | 2017年 / 1860卷 / 01期
基金
美国国家科学基金会;
关键词
Transcription factor domain families; Evolutionary conservation; Family expansion; Retention mechanisms; Plant novelties; FLOWERING-LOCUS-C; MADS-BOX GENES; GENOME-WIDE IDENTIFICATION; KNOX HOMEOBOX GENES; ARABIDOPSIS-THALIANA; MOLECULAR-MECHANISMS; DUPLICATED GENES; NF-Y; FUNCTIONAL DIVERGENCE; EPIGENETIC REGULATION;
D O I
10.1016/j.bbagrm.2016.08.005
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Plant transcription factors (TFs) that interact with specific sequences via DNA-binding domains are crucial for regulating transcriptional initiation and are fundamental to plant development and environmental response. In addition, expansion of TF families has allowed functional divergence of duplicate copies, which has contributed to novel, and in some cases adaptive, traits in plants. Thus, TFs are central to the generation of the diverse plant species that we see today. Major plant agronomic traits, including those relevant to domestication, have also frequently arisen through changes in TF coding sequence or expression patterns. Here our goal is to provide an overview of plant TF evolution by first comparing the diversity of DNA-binding domains and the sizes of these domain families in plants and other eukaryotes. Because TFs are among the most highly expanded gene families in plants, the birth and death process of TFs as well as the mechanisms contributing to their retention are discussed. We also provide recent examples of how TFs have contributed to novel traits that are important in plant evolution and in agriculture.This article is part of a Special Issue entitled: Plant Gene Regulatory Mechanisms and Networks, edited by Dr. Erich Grotewold and Dr. Nathan Springer. (C) 2016 Elsevier B.V. All rights reserved.
引用
收藏
页码:3 / 20
页数:18
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