Advances in metabolic pathway and strain engineering paving the way for sustainable production of chemical building blocks

被引:90
作者
Chen, Yun [1 ]
Nielsen, Jens [1 ,2 ,3 ]
机构
[1] Chalmers Univ Technol, Dept Chem & Biol Engn, Novo Nordisk Fdn Ctr Biosustainabil, SE-41296 Gothenburg, Sweden
[2] Tech Univ Denmark, Novo Nordisk Fdn Ctr Biosustainabil, DK-2970 Horsholm, Denmark
[3] Royal Inst Technol, Sci Life Lab, SE-17165 Solna, Sweden
基金
欧洲研究理事会;
关键词
3-HYDROXYPROPIONIC ACID; ESCHERICHIA-COLI; SUCCINIC ACID; SACCHAROMYCES-CEREVISIAE; BIOTECHNOLOGICAL PRODUCTION; CORYNEBACTERIUM-GLUTAMICUM; RECOMBINANT STRAIN; YEAST; DESIGN; BIOSYNTHESIS;
D O I
10.1016/j.copbio.2013.03.008
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Bio-based production of chemical building blocks from renewable resources is an attractive alternative to petroleum-based platform chemicals. Metabolic pathway and strain engineering is the key element in constructing robust microbial chemical factories within the constraints of cost effective production. Here we discuss how the development of computational algorithms, novel modules and methods, omics-based techniques combined with modeling refinement are enabling reduction in development time and thus advance the field of industrial biotechnology. We further discuss how recent technological developments contribute to the development of novel cell factories for the production of the building block chemicals: adipic acid, succinic acid and 3-hydroxypropionic acid.
引用
收藏
页码:965 / 972
页数:8
相关论文
共 73 条
[11]   A synthetic library of RNA control modules for predictable tuning of gene expression in yeast [J].
Babiskin, Andrew H. ;
Smolke, Christina D. .
MOLECULAR SYSTEMS BIOLOGY, 2011, 7
[12]   From zero to hero-Design-based systems metabolic engineering of Corynebacterium glutamicum for L-lysine production [J].
Becker, Judith ;
Zelder, Oskar ;
Haefner, Stefan ;
Schroeder, Hartwig ;
Wittmann, Christoph .
METABOLIC ENGINEERING, 2011, 13 (02) :159-168
[13]   Evolutionary engineering of Saccharomyces cerevisiae for improved industrially important properties [J].
Cakar, Z. Petek ;
Turanli-Yildiz, Burcu ;
Alkim, Ceren ;
Yilmaz, Ulku .
FEMS YEAST RESEARCH, 2012, 12 (02) :171-182
[14]   A retrosynthetic biology approach to metabolic pathway design for therapeutic production [J].
Carbonell, Pablo ;
Planson, Anne-Gaelle ;
Fichera, Davide ;
Faulon, Jean-Loup .
BMC SYSTEMS BIOLOGY, 2011, 5
[15]   Enhancing the copy number of episomal plasmids in Saccharomyces cerevisiae for improved protein production [J].
Chen, Yun ;
Partow, Siavash ;
Scalcinati, Gionata ;
Siewers, Verena ;
Nielsen, Jens .
FEMS YEAST RESEARCH, 2012, 12 (05) :598-607
[16]   Biotechnological production of succinic acid: current state and perspectives [J].
Cheng, Ke-Ke ;
Zhao, Xue-Bing ;
Zeng, Jing ;
Zhang, Jian-An .
BIOFUELS BIOPRODUCTS & BIOREFINING-BIOFPR, 2012, 6 (03) :302-318
[17]   Prediction of novel synthetic pathways for the production of desired chemicals [J].
Cho, Ayoun ;
Yun, Hongseok ;
Park, Jin Hwan ;
Lee, Sang Yup ;
Park, Sunwon .
BMC SYSTEMS BIOLOGY, 2010, 4
[18]   In Silico Identification of Gene Amplification Targets for Improvement of Lycopene Production [J].
Choi, Hyung Seok ;
Lee, Sang Yup ;
Kim, Tae Yong ;
Woo, Han Min .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2010, 76 (10) :3097-3105
[19]   BioMet Toolbox: genome-wide analysis of metabolism [J].
Cvijovic, Marija ;
Olivares-Hernandez, Roberto ;
Agren, Rasmus ;
Dahr, Niklas ;
Vongsangnak, Wanwipa ;
Nookaew, Intawat ;
Patil, Kiran Raosaheb ;
Nielsen, Jens .
NUCLEIC ACIDS RESEARCH, 2010, 38 :W144-W149
[20]   Organization of Intracellular Reactions with Rationally Designed RNA Assemblies [J].
Delebecque, Camille J. ;
Lindner, Ariel B. ;
Silver, Pamela A. ;
Aldaye, Faisal A. .
SCIENCE, 2011, 333 (6041) :470-474