Synthetic Biology on Acetogenic Bacteria for Highly Efficient Conversion of C1 Gases to Biochemicals

被引:53
作者
Jin, Sangrak [1 ,2 ]
Bae, Jiyun [1 ,2 ]
Song, Yoseb [1 ,2 ]
Pearcy, Nicole [3 ]
Shin, Jongoh [1 ,2 ]
Kang, Seulgi [1 ,2 ]
Minton, Nigel P. [3 ]
Soucaille, Philippe [3 ,4 ,5 ,6 ]
Cho, Byung-Kwan [1 ,2 ,7 ,8 ]
机构
[1] Korea Adv Inst Sci & Technol, Dept Biol Sci, Daejeon 34141, South Korea
[2] Korea Adv Inst Sci & Technol, KAIST Inst BioCentury, Daejeon 34141, South Korea
[3] Univ Nottingham, Sch Life Sci, BBSRC EPSRC Synthet Biol Res Ctr SBRC, Univ Pk, Nottingham NG7 2RD, England
[4] Univ Toulouse, INSA, UPS, INP,LISBP, F-31400 Toulouse, France
[5] Inst Natl Rech Agron INRA, UMR 792, F-31077 Toulouse, France
[6] CNRS, UMR 5504, F-31400 Toulouse, France
[7] Innovat Biomat Ctr, Daejeon 34141, South Korea
[8] Intelligent Synthet Biol Ctr, Daejeon 34141, South Korea
基金
英国生物技术与生命科学研究理事会; 新加坡国家研究基金会;
关键词
acetogenic bacteria; C1 gas fixation; synthetic biology; CRISPR-Cas; CLOSTRIDIUM-LJUNGDAHLII; GENE-EXPRESSION; ETHANOL FERMENTATION; COMMODITY CHEMICALS; ENERGY-CONSERVATION; MEVALONATE PATHWAY; RAPID GENERATION; CRISPR; SYSTEM; MODEL;
D O I
10.3390/ijms21207639
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Synthesis gas, which is mainly produced from fossil fuels or biomass gasification, consists of C1 gases such as carbon monoxide, carbon dioxide, and methane as well as hydrogen. Acetogenic bacteria (acetogens) have emerged as an alternative solution to recycle C1 gases by converting them into value-added biochemicals using the Wood-Ljungdahl pathway. Despite the advantage of utilizing acetogens as biocatalysts, it is difficult to develop industrial-scale bioprocesses because of their slow growth rates and low productivities. To solve these problems, conventional approaches to metabolic engineering have been applied; however, there are several limitations owing to the lack of required genetic bioparts for regulating their metabolic pathways. Recently, synthetic biology based on genetic parts, modules, and circuit design has been actively exploited to overcome the limitations in acetogen engineering. This review covers synthetic biology applications to design and build industrial platform acetogens.
引用
收藏
页码:1 / 25
页数:24
相关论文
共 152 条
[1]   Multiplex genome editing of microorganisms using CRISPR-Cas [J].
Adiego-Perez, Belen ;
Randazzo, Paola ;
Daran, Jean Marc ;
Verwaal, Rene ;
Roubos, Johannes. A. ;
Daran-Lapujade, Pascale ;
van der Oost, John .
FEMS MICROBIOLOGY LETTERS, 2019, 366 (08)
[2]   Transcriptomic profiles of Clostridium ljungdahlii during lithotrophic growth with syngas or H2 and CO2 compared to organotrophic growth with fructose [J].
Aklujkar, Muktak ;
Leang, Ching ;
Shrestha, Pravin M. ;
Shrestha, Minita ;
Lovley, Derek R. .
SCIENTIFIC REPORTS, 2017, 7
[3]   Optimization of carbon and energy utilization through differential translational efficiency [J].
Al-Bassam, Mahmoud M. ;
Kim, Ji-Nu ;
Zaramela, Livia S. ;
Kellman, Benjamin P. ;
Zuniga, Cristal ;
Wozniak, Jacob M. ;
Gonzalez, David J. ;
Zengler, Karsten .
NATURE COMMUNICATIONS, 2018, 9
[4]   Engineering of vitamin prototrophy in Clostridium ljungdahlii and Clostridium autoethanogenum [J].
Annan, Florence J. ;
Al-Sinawi, Bakir ;
Humphreys, Christopher M. ;
Norman, Rupert ;
Winzer, Klaus ;
Kopke, Michael ;
Simpson, Sean D. ;
Minton, Nigel P. ;
Henstra, Anne M. .
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 2019, 103 (11) :4633-4648
[5]   A Multiplex Genome Editing Method for Escherichia coli Based on CRISPR-Cas12a [J].
Ao, Xiang ;
Yao, Yi ;
Li, Tian ;
Yang, Ting-Ting ;
Dong, Xu ;
Zheng, Ze-Tong ;
Chen, Guo-Qiang ;
Wu, Qiong ;
Guo, Yingying .
FRONTIERS IN MICROBIOLOGY, 2018, 9
[6]   Lactose-Inducible System for Metabolic Engineering of Clostridium ljungdahlii [J].
Banerjee, Areen ;
Leang, Ching ;
Ueki, Toshiyuki ;
Nevin, Kelly P. ;
Lovley, Derek R. .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2014, 80 (08) :2410-2416
[7]   A Genetic System for the Thermophilic Acetogenic Bacterium Thermoanaerobacter kivui [J].
Basen, Mirko ;
Geiger, Irina ;
Henke, Laura ;
Mueller, Volker .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2018, 84 (03)
[8]  
Beck ZQ, 2014, Recombinant anaerobic acetogenic bacteria for production of isoprene and/or industrial bio-products using synthesis gas, Patent No. [20140234926A1, 20140234926]
[9]  
Becker F.U, 2012, U.S. Patent, Patent No. [20120101304 A1, 20120101304, US20120101304A1]
[10]   Growth and Localization of Polyhydroxybutyrate Granules in Ralstonia eutropha [J].
Beeby, Morgan ;
Cho, Mimi ;
Stubbe, JoAnne ;
Jensen, Grant J. .
JOURNAL OF BACTERIOLOGY, 2012, 194 (05) :1092-1099