Integration of CRISPR/Cas9 with artificial intelligence for improved cancer therapeutics

被引:32
作者
Bhat, Ajaz A. [1 ]
Nisar, Sabah [1 ]
Mukherjee, Soumi [2 ]
Saha, Nirmalya [3 ]
Yarravarapu, Nageswari [4 ]
Lone, Saife N. [5 ]
Masoodi, Tariq [6 ]
Chauhan, Ravi [7 ]
Maacha, Selma [8 ]
Bagga, Puneet [9 ]
Dhawan, Punita [10 ]
Akil, Ammira Al-Shabeeb [1 ]
El-Rifai, Wael [8 ]
Uddin, Shahab [11 ,12 ]
Reddy, Ravinder [13 ]
Singh, Mayank [7 ]
Macha, Muzafar A. [14 ]
Haris, Mohammad [12 ,13 ]
机构
[1] Sidra Med, Dept Human Genet Precis Med Diabet, Obes & Canc Program, Doha, Qatar
[2] Saha Inst Nucl Phys Complex MSA II, Kolkata, W Bengal, India
[3] Michigan Med, Dept Pathol, Univ Michigan, Ann Arbor, MI USA
[4] Vector Labs Inc, 6737 Mowry Ave, Newark, CA 94560 USA
[5] Cent Univ Kashmir, Sch Life Sci, Dept Biotechnol, Ganderbal, Jammu & Kashmir, India
[6] Sidra Med, Lab Canc Immunol & Genet, Doha, Qatar
[7] All India Inst Med Sci, Dept Med Oncol, New Delhi, India
[8] Univ Miami, Miller Sch Med, Dept Surg, Rosenstiel Med Sci Bldg,1600 NW 10th Ave, Miami, FL 33136 USA
[9] St Jude Childrens Res Hosp, Dept Diagnost Imaging, 332 N Lauderdale St, Memphis, TN 38105 USA
[10] Univ Nebraska Med Ctr, Dept Biochem & Mol Biol, Omaha, NE USA
[11] Hamad Med Corp, Translat Res Inst, Doha, Qatar
[12] Qatar Univ, Lab Anim Res Ctr, Doha, Qatar
[13] Univ Penn, Ctr Adv Metab Imaging Precis Med, Perelman Sch Med, Dept Radiol, Philadelphia, PA 19104 USA
[14] Islamic Univ Sci & Technol, Watson Crick Ctr Mol Med, Awantipora, Jammu & Kashmir, India
关键词
CRISPR; Cas9; Artificial intelligence; Genome engineering; Cancer precision medicine; Cancer Immunotherapy; CAR T-cells; Epigenetics; Drug resistance; Cancer biomarker; PLURIPOTENT STEM-CELLS; OFF-TARGET CLEAVAGE; CHROMOSOMAL TRANSLOCATIONS; SGRNA DESIGN; CRISPR-CAS9; RNA; GENE; DNA; RESISTANCE; SCREENS;
D O I
10.1186/s12967-022-03765-1
中图分类号
R-3 [医学研究方法]; R3 [基础医学];
学科分类号
1001 ;
摘要
Gene editing has great potential in treating diseases caused by well-characterized molecular alterations. The introduction of clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated protein 9 (Cas9)-based gene-editing tools has substantially improved the precision and efficiency of gene editing. The CRISPR/Cas9 system offers several advantages over the existing gene-editing approaches, such as its ability to target practically any genomic sequence, enabling the rapid development and deployment of novel CRISPR-mediated knock-out/knock-in methods. CRISPR/Cas9 has been widely used to develop cancer models, validate essential genes as druggable targets, study drug-resistance mechanisms, explore gene non-coding areas, and develop biomarkers. CRISPR gene editing can create more-effective chimeric antigen receptor (CAR)-T cells that are durable, cost-effective, and more readily available. However, further research is needed to define the CRISPR/Cas9 system's pros and cons, establish best practices, and determine social and ethical implications. This review summarizes recent CRISPR/Cas9 developments, particularly in cancer research and immunotherapy, and the potential of CRISPR/Cas9-based screening in developing cancer precision medicine and engineering models for targeted cancer therapy, highlighting the existing challenges and future directions. Lastly, we highlight the role of artificial intelligence in refining the CRISPR system's on-target and off-target effects, a critical factor for the broader application in cancer therapeutics.
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页数:18
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