All Atom Protein Folding Simulations With Distributed Computational Resources

被引:0
作者
Strunk, Timo [1 ]
Klenin, Konstantin [2 ]
Wenzel, Wolfgang [1 ,2 ]
机构
[1] Forschungszentrum Karlsruhe, Inst Nanotechnol, Eggenstein Leopoldshafen, Germany
[2] Karlsruhe Univ, Ctr Funct Nanostruct, Karlsruhe, Germany
关键词
D O I
10.1016/j.bpj.2008.12.3100
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
3049-Pos
引用
收藏
页码:592A / 592A
页数:1
相关论文
共 50 条
[11]   Comparing a simple theoretical model for protein folding with all-atom molecular dynamics simulations [J].
Henry, Eric R. ;
Best, Robert B. ;
Eaton, William A. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2013, 110 (44) :17880-17885
[12]   Folding processes of the B domain of protein A to the native state observed in all-atom ab initio folding simulations [J].
Lei, Hongxing ;
Wu, Chun ;
Wang, Zhi-Xiang ;
Zhou, Yaoqi ;
Duan, Yong .
JOURNAL OF CHEMICAL PHYSICS, 2008, 128 (23)
[13]   Protein Folding Simulations: From Coarse-Grained Model to All-Atom Model [J].
Zhang, Jian ;
Li, Wenfei ;
Wang, Jun ;
Qin, Meng ;
Wu, Lei ;
Yan, Zhiqiang ;
Xu, Weixin ;
Zuo, Guanghong ;
Wang, Wei .
IUBMB LIFE, 2009, 61 (06) :627-643
[14]   All atom protein folding with massively parallel computers [J].
Verma, Abhinav ;
Oh, Jung S. ;
Lee, Kyu H. ;
Schug, Alexander ;
Klenin, Konstantin ;
Wenzel, Wolfgang .
BIO'07: PROCEEDINGS OF THE 3RD WSEAS INTERNATIONAL CONFERENCE ON CELLULAR AND MOLECULAR BIOLOGY, BIOPHYSICS AND BIOENGINEERING, 2007, :121-+
[15]   All atom simulation of the folding/unfolding thermodynamics of protein A [J].
Garcia, AE ;
Onuchic, JN .
BIOPHYSICAL JOURNAL, 2004, 86 (01) :345A-345A
[16]   A minimalistic all-atom approach to protein folding [J].
Irbäck, A .
JOURNAL OF PHYSICS-CONDENSED MATTER, 2003, 15 (18) :S1797-S1807
[17]   All atom protein folding with stochastic optimization methods [J].
Schug, A ;
Herges, T ;
Wenzel, W .
BIOPHYSICAL JOURNAL, 2005, 88 (01) :332A-332A
[18]   Protein folding simulations: combining coarse-grained models and all-atom molecular dynamics [J].
Colombo, Giorgio ;
Micheletti, Cristian .
THEORETICAL CHEMISTRY ACCOUNTS, 2006, 116 (1-3) :75-86
[19]   Protein Folding Simulations: Combining Coarse-grained Models and All-atom Molecular Dynamics [J].
Giorgio Colombo ;
Cristian Micheletti .
Theoretical Chemistry Accounts, 2006, 116 :75-86
[20]   An independent method for the analysis of protein folding kinetics from all-atom molecular dynamics simulations [J].
Marianayagam, NJ ;
Brown, AG ;
Jackson, SE .
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2005, 23 (01) :73-76