Discriminating Ramos and Jurkat Cells with Image Textures from Diffraction Imaging Flow Cytometry Based on a Support Vector Machine

被引:37
作者
Zhang, Ning [1 ]
Sa, Yu [1 ]
Guo, Yu [1 ]
Lin, Wang [1 ]
Wang, Ping [2 ]
Feng, Yuanming [1 ,2 ,3 ]
机构
[1] Tianjin Univ, Dept Biomed Engn, Tianjin Key Lab BME Measurement, Tianjin 300072, Peoples R China
[2] Tianjin Med Univ Canc Inst & Hosp, Dept Radiat Oncol, Tianjin 300060, Peoples R China
[3] East Carolina Univ, Dept Radiat Oncol, Greenville, NC 27834 USA
基金
中国国家自然科学基金; 新加坡国家研究基金会;
关键词
Flow cytometry; diffraction imaging; Jurkat; Ramos; support vector machine; PREDICTION;
D O I
10.2174/1574893611666160608102537
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Background: The flow cytometry (FCM) has been widely used in both basic and clinical research applications. However, the conventional noncoherent fluorescence and the bright or dark field images acquired spatially integrated and can only yield limited information. Few 3D morphological features of cells can be unveiled. Objective: Diffraction imaging techniques can be used to improve the flow cytometry system and to reflect some 3D morphological features of cells. Method: The newly developed diffraction imaging flow cytometry system (DIFC) in our previous studies could be used to compensate conventional flow cytometries to reflect a cell's 3D morphological features. In this study, we developed a method based on a Support Vector Machine to classify the diffraction images acquired from human acute leukaemia T (Jurkat) cells and Burkitt lymphoma B (Ramos) cells with the diffraction imaging flow cytometry system technique. Results: As a result, an accuracy of 99.38% with MCC value of 0.9875 was achieved in an independent testing dataset, which indicated that the DIFC system could differentiate the cells. Conclusion: It is indicated by the results that strong correlation exists between the characteristic parameters of the images and the 3D morphological features of cells. Since diffraction images correlate strongly to the 3D morphology of cells, this system could be used for studies concerning cellular morphology.
引用
收藏
页码:50 / 56
页数:7
相关论文
共 17 条
[1]   High-content flow cytometry and temporal data analysis for defining a cellular signature graft-versus-host disease [J].
Brinkman, Ryan Remy ;
Gasparetto, Maura ;
Lee, Shang-Jung Jessica ;
Ribickas, Albert J. ;
Perkins, Janelle ;
Janssen, William ;
Smiley, Renee ;
Smith, Clay .
BIOLOGY OF BLOOD AND MARROW TRANSPLANTATION, 2007, 13 (06) :691-700
[2]   LIBSVM: A Library for Support Vector Machines [J].
Chang, Chih-Chung ;
Lin, Chih-Jen .
ACM TRANSACTIONS ON INTELLIGENT SYSTEMS AND TECHNOLOGY, 2011, 2 (03)
[3]   An analysis of co-occurrence texture statistics as a function of grey level quantization [J].
Clausi, DA .
CANADIAN JOURNAL OF REMOTE SENSING, 2002, 28 (01) :45-62
[4]  
Dong K, 2011, P SOC PHOTO-OPT INS, V7902, P7902
[5]   Label-free classification of cultured cells through diffraction imaging [J].
Dong, Ke ;
Feng, Yuanming ;
Jacobs, Kenneth M. ;
Lu, Jun Q. ;
Brock, R. Scott ;
Yang, Li V. ;
Bertrand, Fred E. ;
Farwell, Mary A. ;
Hu, Xin-Hua .
BIOMEDICAL OPTICS EXPRESS, 2011, 2 (06) :1717-1726
[6]   STATISTICAL AND STRUCTURAL APPROACHES TO TEXTURE [J].
HARALICK, RM .
PROCEEDINGS OF THE IEEE, 1979, 67 (05) :786-804
[7]   TEXTURAL FEATURES FOR IMAGE CLASSIFICATION [J].
HARALICK, RM ;
SHANMUGAM, K ;
DINSTEIN, I .
IEEE TRANSACTIONS ON SYSTEMS MAN AND CYBERNETICS, 1973, SMC3 (06) :610-621
[8]   Diffraction imaging of spheres and melanoma cells with a microscope objective [J].
Jacobs, Kenneth M. ;
Yang, Li V. ;
Ding, Junhua ;
Ekpenyong, Andrew E. ;
Castellone, Reid ;
Lu, Jun Q. ;
Hu, Xin-Hua .
JOURNAL OF BIOPHOTONICS, 2009, 2 (8-9) :521-527
[9]   Development of a diffraction imaging flow cytometer [J].
Jacobs, Kenneth M. ;
Lu, Jun Q. ;
Hu, Xin-Hua .
OPTICS LETTERS, 2009, 34 (19) :2985-2987
[10]   γ-turn types prediction in proteins using the support vector machines [J].
Jahandideh, Samad ;
Sarvestani, Amir Sabet ;
Abdolmaleki, Parviz ;
Jahandideh, Mina ;
Barfeie, Mahdyar .
JOURNAL OF THEORETICAL BIOLOGY, 2007, 249 (04) :785-790