In silico aided metabolic engineering of Saccharomyces cerevisiae for improved bioethanol production

被引:239
作者
Bro, C
Regenberg, B
Förster, J
Nielsen, J
机构
[1] Tech Univ Denmark, Ctr Microbial Biotechol, Bioctr, DK-2800 Lyngby, Denmark
[2] Fluxome Sci AS, DK-2800 Lyngby, Denmark
关键词
Saccharomyces cerevisiae; genome-scale model; redox metabolism; non-phosphorylating NADP(+)-dependent glyceraldehydes-3-phosphate dehydrogenase; ethanol; glycerol; xylose;
D O I
10.1016/j.ymben.2005.09.007
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
In silico genome-scale cell models are promising tools for accelerating the design of cells with improved and desired properties. We demonstrated this by using a genome-scale reconstructed metabolic network of Saccharomyces cerevisiae to score a number of strategies for metabolic engineering of the redox metabolism that will lead to decreased glycerol and increased ethanol yields on glucose under anaerobic conditions. The best-scored strategies were predicted to completely eliminate formation of glycerol and increase ethanol yield with 10%. We successfully pursued one of the best strategies by expressing a non-phosphorylating, NADP+-dependent glyceraldehyde-3-phosphate dehydrogenase in S. cerevisiae. The resulting strain had a 40% lower glycerol yield on glucose while the ethanol yield increased with 3% without affecting the maximum specific growth rate. Similarly, expression of GAPN in a strain harbouring xylose reductase and xylitol dehydrogenase led to an improvement in ethanol yield by up to 25% on xylose/glucose mixtures. (c) 2005 Elsevier Inc. All rights reserved.
引用
收藏
页码:102 / 111
页数:10
相关论文
共 39 条
[1]   Construction of lycopene-overproducing E-coli strains by combining systematic and combinatorial gene knockout targets [J].
Alper, H ;
Miyaoku, K ;
Stephanopoulos, G .
NATURE BIOTECHNOLOGY, 2005, 23 (05) :612-616
[2]   A NEW GLYCERALDEHYDE PHOSPHATE DEHYDROGENASE FROM PHOTOSYNTHETIC TISSUES [J].
ARNON, DI ;
ROSENBERG, LL ;
WHATLEY, FR .
NATURE, 1954, 173 (4415) :1132-1134
[3]   Lessons from metabolic engineering for functional genomics and drug discovery [J].
Bailey, JE .
NATURE BIOTECHNOLOGY, 1999, 17 (07) :616-618
[4]   TOWARD A SCIENCE OF METABOLIC ENGINEERING [J].
BAILEY, JE .
SCIENCE, 1991, 252 (5013) :1668-1675
[5]  
Bjorkqvist S, 1997, APPL ENVIRON MICROB, V63, P128
[6]   SEQUENCE, EXPRESSION, AND FUNCTION OF THE GENE FOR THE NONPHOSPHORYLATING, NADP-DEPENDENT GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF STREPTOCOCCUS-MUTANS [J].
BOYD, DA ;
CVITKOVITCH, DG ;
HAMILTON, IR .
JOURNAL OF BACTERIOLOGY, 1995, 177 (10) :2622-2627
[7]   Probing the performance limits of the Escherichia coli metabolic network subject to gene additions or deletions [J].
Burgard, AP ;
Maranas, CD .
BIOTECHNOLOGY AND BIOENGINEERING, 2001, 74 (05) :364-375
[8]   Metabolic modeling of microbial strains in silico [J].
Covert, MW ;
Schilling, CH ;
Famili, I ;
Edwards, JS ;
Goryanin, II ;
Selkov, E ;
Palsson, BO .
TRENDS IN BIOCHEMICAL SCIENCES, 2001, 26 (03) :179-186
[9]  
CROW VL, 1979, J BIOL CHEM, V254, P1134
[10]   CLONING AND CHARACTERIZATION OF GPD2, A 2ND GENE ENCODING SN-GLYCEROL 3-PHOSPHATE DEHYDROGENASE (NAD(+)) IN SACCHAROMYCES-CEREVISIAE, AND ITS COMPARISON WITH GPD1 [J].
ERIKSSON, P ;
ANDRE, L ;
ANSELL, R ;
BLOMBERG, A ;
ADLER, L .
MOLECULAR MICROBIOLOGY, 1995, 17 (01) :95-107