Communicability betweenness in complex networks

被引:89
作者
Estrada, Ernesto [1 ,2 ,3 ]
Higham, Desmond J. [2 ]
Hatano, Naomichi [3 ]
机构
[1] Univ Strathclyde, Inst Complex Syst Strathclyde, Dept Phys, Glasgow G1 1XH, Lanark, Scotland
[2] Univ Strathclyde, Dept Math, Glasgow G1 1XH, Lanark, Scotland
[3] Univ Tokyo, Inst Ind Sci, Komaba, Meguro 1538505, Japan
基金
英国工程与自然科学研究理事会;
关键词
Centrality measures; Protein-protein interactions; Communicability; Spectral graph theory; Conserved proteins; Linear response; Frechet derivative; CENTRALITY;
D O I
10.1016/j.physa.2008.11.011
中图分类号
O4 [物理学];
学科分类号
0702 ;
摘要
Betweenness measures provide quantitative tools to pick out fine details from the massive amount of interaction data that is available from large complex networks. They allow us to study the extent to which a node takes part when information is passed around the network. Nodes with high betweenness may be regarded as key players that have a highly active role. At one extreme, betweenness has been defined by considering information passing only through the shortest paths between pairs of nodes. At the other extreme, an alternative type of betweenness has been defined by considering all possible walks of any length. In this work, we propose a betweenness measure that lies between these two opposing viewpoints. We allow information to pass through all possible routes, but introduce a scaling so that longer walks carry less importance. This new definition shares a similar philosophy to that of communicability for pairs of nodes in a network, which was introduced by Estrada and Hatano [E. Estrada, N. Hatano, Phys. Rev. E 77 (2008) 36111]. Having defined this new communicability betweenness measure, we show that it can be characterized neatly in terms of the exponential of the adjacency matrix. We also show that this measure is closely related to a Frechet derivative of the matrix exponential. This allows us to conclude that it also describes network sensitivity when the edges of a given node are subject to infinitesimally small perturbations. Using illustrative synthetic and real life networks, we show that the new betweenness measure behaves differently to existing versions, and in particular we show that it recovers meaningful biological information from a protein-protein interaction network. (c) 2008 Elsevier B.V. All rights reserved.
引用
收藏
页码:764 / 774
页数:11
相关论文
共 34 条
[1]   Statistical mechanics of complex networks [J].
Albert, R ;
Barabási, AL .
REVIEWS OF MODERN PHYSICS, 2002, 74 (01) :47-97
[2]   Error and attack tolerance of complex networks [J].
Albert, R ;
Jeong, H ;
Barabási, AL .
NATURE, 2000, 406 (6794) :378-382
[3]  
[Anonymous], 2008, Function of Matrices: Theory and Computation
[4]   Complex networks: Structure and dynamics [J].
Boccaletti, S. ;
Latora, V. ;
Moreno, Y. ;
Chavez, M. ;
Hwang, D. -U. .
PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS, 2006, 424 (4-5) :175-308
[5]   FACTORING AND WEIGHTING APPROACHES TO STATUS SCORES AND CLIQUE IDENTIFICATION [J].
BONACICH, P .
JOURNAL OF MATHEMATICAL SOCIOLOGY, 1972, 2 (01) :113-120
[6]  
BONACICH P, 1987, AM J SOCIOL, V92, P1170, DOI 10.1086/228631
[7]   Centrality and network flow [J].
Borgatti, SP .
SOCIAL NETWORKS, 2005, 27 (01) :55-71
[8]   A graph-theoretic perspective on centrality [J].
Borgatti, Stephen P. ;
Everett, Martin G. .
SOCIAL NETWORKS, 2006, 28 (04) :466-484
[9]   Interaction network containing conserved and essential protein complexes in Escherichia coli [J].
Butland, G ;
Peregrín-Alvarez, JM ;
Li, J ;
Yang, WH ;
Yang, XC ;
Canadien, V ;
Starostine, A ;
Richards, D ;
Beattie, B ;
Krogan, N ;
Davey, M ;
Parkinson, J ;
Greenblatt, J ;
Emili, A .
NATURE, 2005, 433 (7025) :531-537
[10]   Characterization of complex networks: A survey of measurements [J].
Costa, L. Da F. ;
Rodrigues, F. A. ;
Travieso, G. ;
Boas, P. R. Villas .
ADVANCES IN PHYSICS, 2007, 56 (01) :167-242