The complete chloroplast genome of Cymbidium longibracteatum (Orchidaceae) and phylogenetic analysis

被引:1
|
作者
Ning, Huijuan [1 ,2 ]
Shao, Lei [2 ]
Dai, Silan [1 ]
机构
[1] Beijing Forestry Univ, Coll Landscape Architecture, Beijing, Peoples R China
[2] Zhejiang Agr & Forestry Univ, Sch Landscape Architecture, Zhejiang Prov Key Lab Germplasm Innovat & Utiliza, Key Lab Natl Forestry & Grassland Adm Germplasm I, Hangzhou, Peoples R China
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2020年 / 5卷 / 03期
关键词
Cymbidium longibracteatum; chloroplast genome; Illumina sequencing; phylogeny; TOOL;
D O I
10.1080/23802359.2020.1780968
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Cymbidium longibracteatum is a common cultivated species in the genus Cymbidium due to its elegant appearance, rich flower colors and strong fragrance, but its classification is quite controversial. In this study, the complete chloroplast genome of C. longibracteatum was obtained by Illumina sequencing. The chloroplast genome of C. longibracteatum is 150,070 bp in length with an overall GC content of 37.12%, which contains a large single-copy (LSC;84,949 bp) region, a small single-copy (SSC;13,745bp) region, and a pair of inverted repeats (IRs; 25,688 bp) regions. The genome contains 130 genes, namely 84 protein-coding genes, 38 tRNA genes and 8 rRNA genes. The maximum-likelihood phylogenetic tree has proved that C. longibracteatum should exist as an independent species in the genus Cymbidium, and it is most closely related to C. tortisepalum. This study provides valuable sequence resources for further study of C. longibracteatum.
引用
收藏
页码:2948 / 2949
页数:2
相关论文
共 50 条
  • [31] The Complete Chloroplast Genomes of Bulbophyllum (Orchidaceae) Species: Insight into Genome Structure Divergence and Phylogenetic Analysis
    Wu, Yuwei
    Zeng, Meng-Yao
    Wang, Huan-Xin
    Lan, Siren
    Liu, Zhong-Jian
    Zhang, Shibao
    Li, Ming-He
    Guan, Yunxiao
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2024, 25 (05)
  • [32] Complete chloroplast genome of the genus Cymbidium: lights into the species identification, phylogenetic implications and population genetic analyses
    Yang, Jun-Bo
    Tang, Min
    Li, Hong-Tao
    Zhang, Zhi-Rong
    Li, De-Zhu
    BMC EVOLUTIONARY BIOLOGY, 2013, 13
  • [33] Complete chloroplast genome of the genus Cymbidium: lights into the species identification, phylogenetic implications and population genetic analyses
    Jun-Bo Yang
    Min Tang
    Hong-Tao Li
    Zhi-Rong Zhang
    De-Zhu Li
    BMC Evolutionary Biology, 13
  • [34] Comparative and Phylogenetic Analysis of the Complete Chloroplast Genome of Santalum (Santalaceae)
    Liu, Xiaojin
    Xu, Daping
    Hong, Zhou
    Zhang, Ningnan
    Cui, Zhiyi
    FORESTS, 2021, 12 (10):
  • [35] Complete Chloroplast Genome Sequence and Phylogenetic Analysis of Paeonia ostii
    Guo, Shuai
    Guo, Lili
    Zhao, Wei
    Xu, Jiang
    Li, Yuying
    Zhang, Xiaoyan
    Shen, Xiaofeng
    Wu, Mingli
    Hou, Xiaogai
    MOLECULES, 2018, 23 (02):
  • [36] Complete Chloroplast Genome Sequence and Phylogenetic Analysis of Aster tataricus
    Shen, Xiaofeng
    Guo, Shuai
    Yin, Yu
    Zhang, Jingjing
    Yin, Xianmei
    Liang, Conglian
    Wang, Zhangwei
    Huang, Bingfeng
    Liu, Yanhong
    Xiao, Shuiming
    Zhu, Guangwei
    MOLECULES, 2018, 23 (10):
  • [37] The complete chloroplast genome sequence of Calanthe sieboldii (orchidaceae)
    Peng, Cuiying
    Liao, Dezhi
    Liu, Kun
    Wang, Xujun
    Guo, Wei
    MITOCHONDRIAL DNA PART B-RESOURCES, 2024, 9 (03): : 314 - 317
  • [38] The complete chloroplast genome and phylogenetic analysis of Jacobaea maritima (Asteraceae)
    Zhang, Kai
    Gong, Shoufu
    MITOCHONDRIAL DNA PART B-RESOURCES, 2023, 8 (07): : 771 - 776
  • [39] The complete chloroplast genome of Torreya nucifera (Taxaceae) and phylogenetic analysis
    Shin, Sookyung
    Kim, Sang-Chul
    Hong, Kyung Nak
    Kang, Hyesoon
    Lee, Jei-Wan
    MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (02): : 2537 - 2538
  • [40] Complete chloroplast genome of Saussurea inversa (Asteraceae) and phylogenetic analysis
    Wang, Jun
    He, Rui
    Zhang, Huixuan
    Hu, Yanping
    Wang, Jianke
    Wang, Li
    Li, Yi
    MITOCHONDRIAL DNA PART B-RESOURCES, 2021, 6 (01): : 8 - 9