The solution structure of the N-terminal proteinase domain of the hepatitis C virus (HCV) NS3 protein provides new insights into its activation and catalytic mechanism

被引:102
作者
Barbato, G [1 ]
Cicero, DO [1 ]
Nardi, MC [1 ]
Steinkühler, C [1 ]
Cortese, R [1 ]
De Francesco, R [1 ]
Bazzo, R [1 ]
机构
[1] Ist Ric Biol Mol P Angeletti, I-00040 Pomezia, Italy
关键词
HCV; NS3; serine proteinase; structure; NMR;
D O I
10.1006/jmbi.1999.2745
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The solution structure of the hepatitis C virus (BK strain) NS3 protein N-terminal domain (186 residues) has been solved by NMR spectroscopy. The protein is a serine protease with a chymotrypsin-type fold, and is involved in the maturation of the viral polyprotein. Despite the knowledge that its activity is enhanced by the action of a viral protein cofactor, NS4A, the mechanism of activation is not yet clear. The analysis of the folding in solution and the differences from the crystallographic structures allow the formulation of a model in which, in addition to the NS4A cofactor, the substrate plays an important role in the activation of the catalytic mechanism. A unique structural feature is the presence of a zinc-binding site exposed on the surface, subject to a slow conformational exchange process. (C) 1999 Academic Press.
引用
收藏
页码:371 / 384
页数:14
相关论文
共 57 条
[2]   Molecular targets in inhibition of hepatitis C virus replication [J].
Bartenschlager, R .
ANTIVIRAL CHEMISTRY & CHEMOTHERAPY, 1997, 8 (04) :281-301
[3]   METHODOLOGICAL ADVANCES IN PROTEIN NMR [J].
BAX, A ;
GRZESIEK, S .
ACCOUNTS OF CHEMICAL RESEARCH, 1993, 26 (04) :131-138
[4]   VIRAL CYSTEINE PROTEASES ARE HOMOLOGOUS TO THE TRYPSIN-LIKE FAMILY OF SERINE PROTEASES - STRUCTURAL AND FUNCTIONAL IMPLICATIONS [J].
BAZAN, JF ;
FLETTERICK, RJ .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1988, 85 (21) :7872-7876
[5]  
BLEVINS RA, 1985, J BIOL CHEM, V260, P4264
[6]   THE REFINED 2.2-A (0.22-NM) X-RAY CRYSTAL-STRUCTURE OF THE TERNARY COMPLEX FORMED BY BOVINE TRYPSINOGEN, VALINE-VALINE AND THE ARG15 ANALOG OF BOVINE PANCREATIC TRYPSIN-INHIBITOR [J].
BODE, W ;
WALTER, J ;
HUBER, R ;
WENZEL, HR ;
TSCHESCHE, H .
EUROPEAN JOURNAL OF BIOCHEMISTRY, 1984, 144 (01) :185-190
[7]   THE REFINED 1.9 A CRYSTAL-STRUCTURE OF HUMAN ALPHA-THROMBIN - INTERACTION WITH D-PHE-PRO-ARG CHLOROMETHYLKETONE AND SIGNIFICANCE OF THE TYR-PRO-PRO-TRP INSERTION SEGMENT [J].
BODE, W ;
MAYR, I ;
BAUMANN, U ;
HUBER, R ;
STONE, SR ;
HOFSTEENGE, J .
EMBO JOURNAL, 1989, 8 (11) :3467-3475
[8]   REFINED 2 A X-RAY CRYSTAL-STRUCTURE OF PORCINE PANCREATIC KALLIKREIN-A, A SPECIFIC TRYPSIN-LIKE SERINE PROTEINASE - CRYSTALLIZATION, STRUCTURE DETERMINATION, CRYSTALLOGRAPHIC REFINEMENT, STRUCTURE AND ITS COMPARISON WITH BOVINE TRYPSIN [J].
BODE, W ;
CHEN, ZG ;
BARTELS, K ;
KUTZBACH, C ;
SCHMIDTKASTNER, G ;
BARTUNIK, H .
JOURNAL OF MOLECULAR BIOLOGY, 1983, 164 (02) :237-282
[9]  
BRUNGER AT, 1993, XPLOR VERSION 3 1 SY
[10]   THE STRUCTURES AND PROTEOLYTIC SPECIFICITIES OF AUTOLYSED HUMAN THROMBIN [J].
CHANG, JY .
BIOCHEMICAL JOURNAL, 1986, 240 (03) :797-802