Linkage of Data from Diverse Data Sources (LDS): A Data Combination Model Provides Clinical Data of Corresponding Specimens in Biobanking Information System

被引:4
作者
Eminaga, Okyaz [1 ,3 ]
Ozgur, Enver [1 ]
Semjonow, Axel [2 ]
Herden, Jan [1 ]
Akbarov, Ilgar [1 ]
Tok, Ali [1 ]
Engelmann, Udo [1 ]
Wille, Sebastian [1 ]
机构
[1] Univ Hosp Cologne, Dept Urol, D-50937 Cologne, Germany
[2] Univ Hosp Muenster, Dept Urol, D-48149 Munster, Germany
[3] Univ Hosp Cologne, Dept Urol, Prostate Ctr, Kerpener St 62, D-50937 Cologne, Germany
关键词
Biobanking; LDS; Multiple data sources; Single data source; uro-oncology; SINGLE-SOURCE; PATIENT-CARE; NIH; CROSSROADS; ROADMAP;
D O I
10.1007/s10916-013-9975-y
中图分类号
R19 [保健组织与事业(卫生事业管理)];
学科分类号
摘要
To provide sufficient clinical data for corresponding specimens from diverse databases established before the implementation of biobanks for research purposes with respect to data privacy regulations. For this purpose, we developed a data model called "linkage of data from diverse data sources (LDS)". The data model was developed to merge clinical data from an existing local database with biospecimen repository data in our serum bank for uro-oncology. This concept combines two data models based on XML: the first stores information required to connect multiple data sources and retrieve clinical data, and the second provides a data architecture to acquire clinical and repository data. All data were anonymized and encrypted using the Advanced Encryption Standard. X. 509 certificates were applied to secure data access. Furthermore, we tested the feasibility of implementing these models in the information management system for biobanking. The data concept can provide clinical and repository data of biospecimens. Only authorized receivers can access these data. Sensitive and personal data are not accessible by the data receivers. The data receiver cannot backtrack to the individual donor using the data model. The acquired data can be converted into a text file format supported by familiar statistical software. Supplementary tools were implemented to generate and view XML documents based on these data models. This data model provides an effective approach to distribute clinical and repository data from different data sources to enable data analysis compliant with data privacy regulations.
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页数:12
相关论文
共 36 条
  • [1] Abdollah F, 2012, UROL ONCOL, DOI [10.1016/j.urolonc.2012.04.013, DOI 10.1016/J.UR0L0NC.2012.04.013]
  • [2] The Time Needed for Clinical Documentation versus Direct Patient Care - A Work-sampling Analysis of Physicians' Activities
    Ammenwerth, E.
    Spoetl, H.-P.
    [J]. METHODS OF INFORMATION IN MEDICINE, 2009, 48 (01) : 84 - 91
  • [3] [Anonymous], 2013, XML ENCR DIG SIGN
  • [4] [Anonymous], 2012, ORACLE VM VIRTUALBOX
  • [5] [Anonymous], 2012, PARALLELS DESKTOP 8
  • [6] [Anonymous], 2012, W3C XML SCHEMA DEF 2, P5
  • [7] Recruitment of newly diagnosed ovarian cancer patients proved challenging in a multicentre biobanking study
    Balogun, Nyaladzi
    Gentry-Maharaj, Aleksandra
    Wozniak, Eva L.
    Lim, Anita
    Ryan, Andy
    Ramus, Susan J.
    Ford, Jeremy
    Burnell, Matthew
    Widschwendter, Martin
    Gessler, Sue F.
    Gayther, Simon A.
    Jacobs, Ian J.
    Menon, Usha
    [J]. JOURNAL OF CLINICAL EPIDEMIOLOGY, 2011, 64 (05) : 525 - 530
  • [8] EUSTAR biobanking: recommendations for the collection, storage and distribution of biospecimens in scleroderma research
    Beyer, Christian
    Distler, Joerg H. W.
    Allanore, Yannick
    Aringer, Martin
    Avouac, Jerome
    Czirjak, Laszlo
    Cutolo, Maurizio
    Damjanov, Nemanja
    Del Galdo, Francesco
    Fligelstone, Kim
    Guiducci, Serena
    Kowal-Bielecka, Otylia
    van Laar, Jacob M.
    Martucci-Cerinic, Marco
    Mueller-Ladner, Ulf
    Riemekasten, Gabriela
    Tarner, Ingo H.
    Tyndall, Alan
    Kennedy, Ann Tyrrell
    Valentini, Gabriele
    Vettori, Serena
    Walker, Ulrich A.
    Denton, Christopher
    Distler, Oliver
    [J]. ANNALS OF THE RHEUMATIC DISEASES, 2011, 70 (07) : 1178 - 1182
  • [9] HIS-based electronic documentation can significantly reduce the time from biopsy to final report for prostate tumours and supports quality management as well as clinical research
    Breil, Bernhard
    Semjonow, Axel
    Dugas, Martin
    [J]. BMC MEDICAL INFORMATICS AND DECISION MAKING, 2009, 9
  • [10] Clinical research in the United States at a crossroads - Proposal for a novel public-private partnership to establish a National Clinical Research Enterprise
    Crowley, WF
    Sherwood, L
    Salber, P
    Scheinberg, D
    Slavkin, H
    Tilson, H
    Reece, EA
    Catanese, V
    Johnson, SB
    Dobs, A
    Genel, M
    Korn, A
    Reame, N
    Bonow, R
    Grebb, J
    Rimoin, D
    [J]. JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION, 2004, 291 (09): : 1120 - 1126