Plant genome evolution: lessons from comparative genomics at the DNA level

被引：57

作者：

Schmidt, R ^{[1
]}

机构：

[1] Max Planck Gesell, Max Delbruck Lab, D-50829 Cologne, Germany

来源：

PLANT MOLECULAR BIOLOGY | 2002年 / 48卷 / 1-2期

关键词：

collinearity; comparative mapping; comparative sequence analysis; genome; retroelement; sequence conservation;

D O I：

10.1023/A:1013788306201

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

Angiosperm genomes show tremendous variability in genome size and chromosome number. Nevertheless, comparative genetic mapping has revealed genome collinearity of closely related species. Sequence-based comparisons were used to assess the conservation of gene arrangements. Numerous small rearrangements, insertions/deletions, duplications, inversions and translocations have been detected. Importantly, comparative sequence analyses have unambiguously shown micro-collinearity of distantly related plant species. Duplications and subsequent gene loss have been identified as a particular important factor in the evolution of plant genomes.

引用

页码：21 / 37

页数：17

共 50 条

[11] Comparative bacterial genomics: defining the minimal core genome [J].

C. H. Huang ;

T. Hsiang ;

J. T. Trevors .

Antonie van Leeuwenhoek, 2013, 103 :385-398

[12] Chloroplast genome sequences from total DNA for plant identification [J].

Nock, Catherine J. ;

Waters, Daniel L. E. ;

Edwards, Mark A. ;

Bowen, Stirling G. ;

Rice, Nicole ;

Cordeiro, Giovanni M. ;

Henry, Robert J. .

PLANT BIOTECHNOLOGY JOURNAL, 2011, 9 (03) :328-333

[13] Chromosome-level genome assembly and comparative genomics shed light on Helicoverpa assulta ecology and pest management [J].

Kim, Juil ;

Rahman, Md-Mafizur ;

Han, Changhee ;

Shin, Jiyeong ;

Ahn, Seung-Joon .

PEST MANAGEMENT SCIENCE, 2024, 80 (10) :5440-5451

[14] Genome assembly of the JD17 soybean provides a new reference genome for comparative genomics [J].

Yi, Xinxin ;

Liu, Jing ;

Chen, Shengcai ;

Wu, Hao ;

Liu, Min ;

Xu, Qing ;

Lei, Lingshan ;

Lee, Seunghee ;

Zhang, Bao ;

Kudrna, Dave ;

Fan, Wei ;

Wing, Rod A. ;

Wang, Xuelu ;

Zhang, Mengchen ;

Zhang, Jianwei ;

Yang, Chunyan ;

Chen, Nansheng .

G3-GENES GENOMES GENETICS, 2022, 12 (04)

[15] Comparative genomics of Coniophora olivacea reveals different patterns of genome expansion in Boletales [J].

Castanera, Raul ;

Perez, Gumer ;

Lopez-Varas, Leticia ;

Amselem, Joelle ;

LaButti, Kurt ;

Singan, Vasanth ;

Lipzen, Anna ;

Haridas, Sajeet ;

Barry, Kerrie ;

Grigoriev, Igor V. ;

Pisabarro, Antonio G. ;

Ramirez, Lucia .

BMC GENOMICS, 2017, 18

[16] The genome sequence of the biocontrol fungus Metarhizium anisopliae and comparative genomics of Metarhizium species [J].

Pattemore, Julie A. ;

Hane, James K. ;

Williams, Angela H. ;

Wilson, Bree A. L. ;

Stodart, Ben J. ;

Ash, Gavin J. .

BMC GENOMICS, 2014, 15

[17] The genome sequence of the biocontrol fungus Metarhizium anisopliae and comparative genomics of Metarhizium species [J].

Julie A Pattemore ;

James K Hane ;

Angela H Williams ;

Bree AL Wilson ;

Ben J Stodart ;

Gavin J Ash .

BMC Genomics, 15

[18] Comparative genomics of Coniophora olivacea reveals different patterns of genome expansion in Boletales [J].

Raúl Castanera ;

Gúmer Pérez ;

Leticia López-Varas ;

Joëlle Amselem ;

Kurt LaButti ;

Vasanth Singan ;

Anna Lipzen ;

Sajeet Haridas ;

Kerrie Barry ;

Igor V. Grigoriev ;

Antonio G. Pisabarro ;

Lucía Ramírez .

BMC Genomics, 18

[19] The genome of the zebra mussel, Dreissena polymorpha: a resource for comparative genomics, invasion genetics, and biocontrol [J].

McCartney, Michael A. ;

Auch, Benjamin ;

Kono, Thomas ;

Mallez, Sophie ;

Zhang, Ying ;

Obille, Angelico ;

Becker, Aaron ;

Abrahante, Juan E. ;

Garbe, John ;

Badalamenti, Jonathan P. ;

Herman, Adam ;

Mangelson, Hayley ;

Liachko, Ivan ;

Sullivan, Shawn ;

Sone, Eli D. ;

Koren, Sergey ;

Silverstein, Kevin A. T. ;

Beckman, Kenneth B. ;

Gohl, Daryl M. .

G3-GENES GENOMES GENETICS, 2022, 12 (02)

[20] Comparative genomics and transcriptomics of Chrysolophus provide insights into the evolution of complex plumage coloration [J].

Gao, Guangqi ;

Xu, Meng ;

Bai, Chunling ;

Yang, Yulan ;

Li, Guangpeng ;

Xu, Junyang ;

Wei, Zhuying ;

Min, Jiumeng ;

Su, Guanghua ;

Zhou, Xianqiang ;

Guo, Jun ;

Hao, Yu ;

Zhang, Guiping ;

Yang, Xukui ;

Xu, Xiaomin ;

Widelitz, Randall B. ;

Chuong, Cheng-Ming ;

Zhang, Chi ;

Yin, Jun ;

Zuo, Yongchun .

GIGASCIENCE, 2018, 7 (10)

← 1 2 3 4 5 →