Modification of the CHARMM force field for DMPC lipid bilayer
被引:56
作者:
Hogberg, Carl-Johan
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机构:
Stockholm Univ, Arrhenius Lab, Div Phys Chem, SE-10691 Stockholm, SwedenStockholm Univ, Arrhenius Lab, Div Phys Chem, SE-10691 Stockholm, Sweden
Hogberg, Carl-Johan
[1
]
Nikitin, Alexei M.
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h-index: 0
机构:
Stockholm Univ, Arrhenius Lab, Div Phys Chem, SE-10691 Stockholm, Sweden
Russian Acad Sci, VA Engelhardt Mol Biol Inst, Moscow 119991, RussiaStockholm Univ, Arrhenius Lab, Div Phys Chem, SE-10691 Stockholm, Sweden
Nikitin, Alexei M.
[1
,2
]
Lyubartsev, Alexander P.
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h-index: 0
机构:
Stockholm Univ, Arrhenius Lab, Div Phys Chem, SE-10691 Stockholm, SwedenStockholm Univ, Arrhenius Lab, Div Phys Chem, SE-10691 Stockholm, Sweden
Lyubartsev, Alexander P.
[1
]
机构:
[1] Stockholm Univ, Arrhenius Lab, Div Phys Chem, SE-10691 Stockholm, Sweden
[2] Russian Acad Sci, VA Engelhardt Mol Biol Inst, Moscow 119991, Russia
molecular dynamics;
lipid bilayers;
force field;
DMPC;
hydration;
D O I:
10.1002/jcc.20974
中图分类号:
O6 [化学];
学科分类号:
0703 ;
摘要:
The CHARMM force field for DMPC lipids was modified in order to improve agreement with experiment for a number of important properties of hydrated lipid bilayer. The modification consists in introduction of a scaling factor 0.83 for 1-4 electrostatic interactions (between atoms separated by three covalent bonds), which provides correct transgauche ratio in the alkane tails, and recalculation of the headgroup charges on the basis of HF/6-311 (d,p) ab-initio computations. Both rigid TIP3P and flexible SPC water models were used with the new lipid model, showing similar results. The new model in a 75 ns simulation has shown a correct value of the area per lipid at zero surface tension, as well as good agreement with the experiment for the electron density, structure factor, and order parameters, including those in the headgroup part of lipids. (C) 2008 Wiley Periodicals, Inc.
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页码:2359 / 2369
页数:11
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