Electrically Induced Conformational Change of Peptides on Metallic Nanosurfaces

被引:57
作者
Chen, Yi [2 ,3 ]
Cruz-Chu, Eduardo R. [1 ,4 ]
Woodard, Jaie C. [4 ]
Gartia, Manas R. [2 ,5 ]
Schulten, Klaus [1 ,4 ,6 ]
Liu, Logan [2 ,3 ]
机构
[1] Univ Illinois, Ctr Biophys & Computat Biol, Urbana, IL 61801 USA
[2] Univ Illinois, Micro & Nanotechnol Lab, Urbana, IL 61801 USA
[3] Univ Illinois, Dept Elect & Comp Engn, Urbana, IL 61801 USA
[4] Univ Illinois, Beckman Inst Adv Sci & Technol, Urbana, IL 61801 USA
[5] Univ Illinois, Dept Nucl Plasma & Radiol Engn, Urbana, IL 61801 USA
[6] Univ Illinois, Dept Phys, Urbana, IL 61801 USA
关键词
electrically induced conformational change; molecule-gold interface; gold nanoparticle; surface-enhanced Raman spectroscopy; molecular dynamics; SELF-ASSEMBLED MONOLAYERS; MOLECULAR-DYNAMICS; SILVER ELECTRODE; FORCE-FIELD; SURFACE; SPECTROSCOPY; PROTEINS; DEVICES; POLYPEPTIDES; SIMULATION;
D O I
10.1021/nn3027408
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Surface immobilized biomolecular probes are used in many areas of biomedical research, such as genomics, proteomics, immunology, and pathology. Although the structural conformations of small DNA and peptide molecules in free solution are well studied both theoretically and experimentally, the conformation of small biomolecules bound on surfaces, especially under the influence of external electric fields, is poorly understood. Using a combination of molecular dynamics simulation and surface-enhanced Raman spectroscopy, we study the external electric field-induced conformational change of dodecapeptide probes tethered to a nanostructured metallic surface. Surface-tethered peptides with and without phosphorylated tyrosine residues are compared to show that peptide conformational change under electric field is sensitive to biochemical modification. Our study proposes a highly sensitive in vitro nanoscale electro-optical detection and manipulation method for biomolecule conformation and charge at bio-nano interfaces.
引用
收藏
页码:8847 / 8856
页数:10
相关论文
共 47 条
[1]  
Aksimentiev Aleksei, 2008, V474, P181, DOI 10.1007/978-1-59745-480-3_11
[2]   ANOMALOUSLY INTENSE RAMAN-SPECTRA OF PYRIDINE AT A SILVER ELECTRODE [J].
ALBRECHT, MG ;
CREIGHTON, JA .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1977, 99 (15) :5215-5217
[3]   Biosensing with plasmonic nanosensors [J].
Anker, Jeffrey N. ;
Hall, W. Paige ;
Lyandres, Olga ;
Shah, Nilam C. ;
Zhao, Jing ;
Van Duyne, Richard P. .
NATURE MATERIALS, 2008, 7 (06) :442-453
[4]   Control of nano/molecular systems by application of macroscopic mechanical stimuli [J].
Ariga, Katsuhiko ;
Mori, Taizo ;
Hill, Jonathan P. .
CHEMICAL SCIENCE, 2011, 2 (02) :195-203
[5]   The death-associated protein kinases: Structure, function, and beyond [J].
Bialik, Shani ;
Kimchi, Adi .
ANNUAL REVIEW OF BIOCHEMISTRY, 2006, 75 :189-210
[6]   MD simulation of a plastocyanin mutant adsorbed onto a gold surface [J].
Bizzarri, AR ;
Costantini, G ;
Cannistraro, S .
BIOPHYSICAL CHEMISTRY, 2003, 106 (02) :111-123
[7]   Genetically engineered gold-binding polypeptides: structure prediction and molecular dynamics [J].
Braun, R ;
Sarikaya, M ;
Schulten, K .
JOURNAL OF BIOMATERIALS SCIENCE-POLYMER EDITION, 2002, 13 (07) :747-757
[8]   Relationship between SERS intensity and both surface coverage and morphology for pyrazine adsorbed on a polycrystalline gold electrode [J].
Brolo, AG ;
Irish, DE ;
Szymanski, G ;
Lipkowski, J .
LANGMUIR, 1998, 14 (02) :517-527
[9]   Light Switching of Molecules on Surfaces [J].
Browne, Wesley R. ;
Feringa, Ben L. .
ANNUAL REVIEW OF PHYSICAL CHEMISTRY, 2009, 60 :407-428
[10]   Importance of the CMAP correction to the CHARMM22 protein force field: Dynamics of hen lysozyme [J].
Buck, M ;
Bouguet-Bonnet, S ;
Pastor, RW ;
MacKerell, AD .
BIOPHYSICAL JOURNAL, 2006, 90 (04) :L36-L38