Quantum chemical calculations for over 200,000 organic radical species and 40,000 associated closed-shell molecules

被引:82
作者
St John, Peter C. [1 ]
Guan, Yanfei [2 ]
Kim, Yeonjoon [1 ]
Etz, Brian D. [1 ]
Kim, Seonah [1 ]
Paton, Robert S. [3 ]
机构
[1] Natl Renewable Energy Lab, Biosci Ctr, 15103 Denver West Pkwy, Golden, CO 80401 USA
[2] MIT, Dept Chem Engn, 77 Massachusetts Ave, Cambridge, MA 02139 USA
[3] Colorado State Univ, Dept Chem, Ft Collins, CO 80523 USA
基金
美国国家科学基金会;
关键词
FORCE-FIELD; CHEMISTRY;
D O I
10.1038/s41597-020-00588-x
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The stabilities of radicals play a central role in determining the thermodynamics and kinetics of many reactions in organic chemistry. In this data descriptor, we provide consistent and validated quantum chemical calculations for over 200,000 organic radical species and 40,000 associated closed-shell molecules containing C, H, N and O atoms. These data consist of optimized 3D geometries, enthalpies, Gibbs free energy, vibrational frequencies, Mulliken charges and spin densities calculated at the M06-2X/def2-TZVP level of theory, which was previously found to have a favorable trade-off between experimental accuracy and computational efficiency. We expect this data to be useful in the further development of machine learning techniques to predict reaction pathways, bond strengths, and other phenomena closely related to organic radical chemistry.
引用
收藏
页数:6
相关论文
共 35 条
[1]   Managing the Computational Chemistry Big Data Problem: The ioChem-BD Platform [J].
Alvarez-Moreno, M. ;
de Graaf, C. ;
Lopez, N. ;
Maseras, F. ;
Poblet, J. M. ;
Bo, C. .
JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2015, 55 (01) :95-103
[2]  
[Anonymous], 2004, ENCY POLYM SCI TECHN
[3]   Gas-phase tropospheric chemistry of biogenic volatile organic compounds: a review [J].
Atkinson, R ;
Arey, J .
ATMOSPHERIC ENVIRONMENT, 2003, 37 :S197-S219
[4]  
Battaglia Peter W, 2018, ARXIV180601261, DOI DOI 10.48550/ARXIV.1806.01261
[5]   Computational Organic Chemistry: Bridging Theory and Experiment in Establishing the Mechanisms of Chemical Reactions [J].
Cheng, Gui-Juan ;
Zhang, Xinhao ;
Chung, Lung Wa ;
Xu, Liping ;
Wu, Yun-Dong .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2015, 137 (05) :1706-1725
[6]   Covalent radii revisited [J].
Cordero, Beatriz ;
Gomez, Veronica ;
Platero-Prats, Ana E. ;
Reves, Marc ;
Echeverria, Jorge ;
Cremades, Eduard ;
Barragan, Flavia ;
Alvarez, Santiago .
DALTON TRANSACTIONS, 2008, (21) :2832-2838
[7]   Prediction Errors of Molecular Machine Learning Models Lower than Hybrid DFT Error [J].
Faber, Felix A. ;
Hutchison, Luke ;
Huang, Bing ;
Gilmer, Justin ;
Schoenholz, Samuel S. ;
Dahl, George E. ;
Vinyals, Oriol ;
Kearnes, Steven ;
Riley, Patrick F. ;
von Lilienfeld, O. Anatole .
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2017, 13 (11) :5255-5264
[8]  
Frisch M. J., 2009, GAUSSIAN 09
[9]  
Gilmer J, 2017, PR MACH LEARN RES, V70
[10]  
Grambow C., 2019, PRODUCTS TRANSITION, DOI DOI 10.26434/CHEMRXIV.11400240.V2