Detection of acute ischemic stroke and backtracking stroke onset time via machine learning analysis of metabolomics

被引:11
作者
Zhang, Yiheng [1 ]
Zhu, Dayu [2 ]
Li, Tao [1 ]
Wang, Xiaoya [1 ]
Zhao, Lili [1 ]
Yang, Xiaofei [3 ]
Dang, Meijuan [1 ]
Li, Ye [1 ]
Wu, Yulun [1 ]
Lu, Ziwei [1 ]
Lu, Jialiang [1 ]
Jian, Yating [1 ]
Wang, Heying [1 ]
Zhang, Lei [1 ]
Lu, Xiaoyun [4 ]
Shen, Ziyu [6 ]
Fan, Hong [1 ]
Cai, Wenshan [2 ,5 ]
Zhang, Guilian [1 ]
机构
[1] Xi An Jiao Tong Univ, Dept Neurol, Affiliated Hosp 2, Xian 710004, Shaanxi, Peoples R China
[2] Georgia Inst Technol, Sch Elect & Comp Engn, Atlanta, GA 30332 USA
[3] Xi An Jiao Tong Univ, Fac Elect & Informat Engn, Sch Comp Sci & Technol, Xian 710049, Shaanxi, Peoples R China
[4] Xi An Jiao Tong Univ, Sch Life Sci & Technol, Xian 710049, Shaanxi, Peoples R China
[5] Georgia Inst Technol, Sch Mat Sci & Engn, Atlanta, GA 30332 USA
[6] Guangzhou Kingmed Diagnost Grp Co Ltd, Guangzhou 510030, Guangdong, Peoples R China
基金
中国国家自然科学基金;
关键词
XGBoost; Machine learning; Stroke; Onset time; Metabolites; CEREBRAL-ISCHEMIA; ACID; RAT; METABOLITES; BIOMARKERS; INFARCTION; RISK;
D O I
10.1016/j.biopha.2022.113641
中图分类号
R-3 [医学研究方法]; R3 [基础医学];
学科分类号
1001 ;
摘要
The time window from stroke onset is critical for the treatment decision. However, in unknown onset stroke, it is often difficult to determine the exact onset time because of the lack of assessment methods, which can result in controversial and random treatment decisions. Previous studies have shown that serum biomarkers, in addition to imaging assessment, are useful for determining the stroke onset time. However, as yet there are no specific biomarkers or corresponding methodologies that are accurate and effective for determining the onset time of unknown onset stroke. Herein, we describe our novel advanced metabolites-based machine learning method (termed extreme gradient boost [XGBoost]) combined with recursive feature elimination, which accurately screened five metabolites from 1124 metabolites detected in serum. These metabolites were capable of both detecting acute ischemic stroke and backtracking the acute ischemic stroke onset time. To further investigate the pathological mechanisms of acute ischemic stroke, we also examined characteristic metabolites in different brain regions, and found two metabolites that could distinguish the core infarct area from the ischemic penumbra. Although this study is based on animal experiments, our machine learning framework and selected metabolites may provide a basis for clinical stroke evaluation and treatment.
引用
收藏
页数:9
相关论文
共 44 条
[1]   FATTY ACID SYNTHESIS IN DEVELOPING BRAIN [J].
AEBERHARD, E ;
GRIPPO, J ;
MENKES, JH .
PEDIATRIC RESEARCH, 1969, 3 (06) :590-+
[2]   Core and penumbral nitric oxide synthase activity during cerebral ischemia and reperfusion [J].
Ashwal, S ;
Tone, B ;
Tian, HR ;
Cole, DJ ;
Pearce, WJ .
STROKE, 1998, 29 (05) :1037-1046
[3]   Importance of medium chain fatty acids in animal nutrition [J].
Baltic, B. ;
Starcevic, M. ;
Dordevic, J. ;
Mrdovic, B. ;
Markovic, R. .
59TH INTERNATIONAL MEAT INDUSTRY CONFERENCE MEATCON2017, 2017, 85
[4]   Mutations in the sepiapterin reductase gene cause a novel tetrahydrobiopterin-dependent monoamine-neurotransmitter deficiency without hyperphenylalaninemia [J].
Bonafé, L ;
Thöny, B ;
Penzien, JM ;
Czarnecki, B ;
Blau, N .
AMERICAN JOURNAL OF HUMAN GENETICS, 2001, 69 (02) :269-277
[5]   Blood Biomarkers for the Early Diagnosis of Stroke The Stroke-Chip Study [J].
Bustamante, Alejandro ;
Lopez-Cancio, Elena ;
Pich, Sara ;
Penalba, Anna ;
Giralt, Dolors ;
Garcia-Berrocoso, Teresa ;
Ferrer-Costa, Carles ;
Gasull, Teresa ;
Hernandez-Perez, Maria ;
Millan, Monica ;
Rubiera, Marta ;
Cardona, Pedro ;
Cano, Luis ;
Quesada, Helena ;
Terceno, Mikel ;
Silva, Yolanda ;
Castellanos, Mar ;
Garces, Moises ;
Reverte, Silvia ;
Ustrell, Xavier ;
Mares, Rafael ;
Baiges, Joan Josep ;
Serena, Joaquin ;
Rubio, Francisco ;
Salas, Eduardo ;
Davalos, Antoni ;
Montaner, Joan .
STROKE, 2017, 48 (09) :2419-+
[6]   Metabolomic Estimation of the Diagnosis and Onset Time of Permanent and Transient Cerebral Ischemia [J].
Cambray, Serafi ;
Portero-Otin, Manuel ;
Jove, Mariona ;
Torreguitart, Nuria ;
Colas-Campas, Laura ;
Sanz, Arabela ;
Benabdelhak, Ikram ;
Yemisci, Muge ;
Dalkara, Turgay ;
Donmez-Demir, Buket ;
Egea, Joaquim ;
Purroy, Francisco .
MOLECULAR NEUROBIOLOGY, 2018, 55 (07) :6193-6200
[7]   XGBoost: A Scalable Tree Boosting System [J].
Chen, Tianqi ;
Guestrin, Carlos .
KDD'16: PROCEEDINGS OF THE 22ND ACM SIGKDD INTERNATIONAL CONFERENCE ON KNOWLEDGE DISCOVERY AND DATA MINING, 2016, :785-794
[8]   Intravenous Thrombolysis Administration 3-4.5 h After Acute Ischemic Stroke: A Retrospective, Multicenter Study [J].
Chen, Yu-Wei ;
Sung, Sheng-Feng ;
Chen, Chih-Hung ;
Tang, Sung-Chun ;
Tsai, Li-Kai ;
Lin, Huey-Juan ;
Huang, Hung-Yu ;
Po, Helen L. ;
Sun, Yu ;
Chen, Po-Lin ;
Chan, Lung ;
Wei, Cheng-Yu ;
Lee, Jiunn-Tay ;
Hsieh, Cheng-Yang ;
Lin, Yung-Yang ;
Yeh, Shoou-Jeng ;
Lien, Li-Ming ;
Jeng, Jiann-Shing .
FRONTIERS IN NEUROLOGY, 2019, 10
[9]   Untargeted metabolomics predicts the functional outcome of ischemic stroke [J].
Chi, Nai-Fang ;
Chang, Tzu-Hao ;
Lee, Chen-Yang ;
Wu, Yu-Wei ;
Shen, Ting-An ;
Chan, Lung ;
Chen, Yih-Ru ;
Chiou, Hung-Yi ;
Hsu, Chung Y. ;
Hu, Chaur-Jong .
JOURNAL OF THE FORMOSAN MEDICAL ASSOCIATION, 2021, 120 (01) :234-241
[10]   Mouse Model of Middle Cerebral Artery Occlusion [J].
Chiang, Terrance ;
Messing, Robert O. ;
Chou, Wen-Hai .
JOVE-JOURNAL OF VISUALIZED EXPERIMENTS, 2011, (48)