A high-density consensus map of A and B wheat genomes

被引:105
作者
Marone, Daniela [1 ]
Laido, Giovanni [1 ]
Gadaleta, Agata [2 ]
Colasuonno, Pasqualina [2 ]
Ficco, Donatella B. M. [1 ]
Giancaspro, Angelica [2 ]
Giove, Stefania [2 ]
Panio, Giosue [1 ]
Russo, Maria A. [1 ]
De Vita, Pasquale [1 ]
Cattivelli, Luigi [1 ,3 ]
Papa, Roberto [1 ]
Blanco, Antonio [2 ]
Mastrangelo, Anna M. [1 ]
机构
[1] CRA Cereal Res Ctr, I-71122 Foggia, Italy
[2] Univ Bari, Dept Agroforestry & Environm Biol & Chem, I-70126 Bari, Italy
[3] CRA Genom Res Ctr, I-29017 Fiorenzuola Darda, PC, Italy
关键词
GENETIC-LINKAGE MAP; ARRAYS TECHNOLOGY DART; TRITICUM-AESTIVUM L; SSR MARKERS; DIVERSITY ARRAYS; QTL ANALYSIS; BREAD WHEAT; HOMOEOLOGOUS GROUP-4; ASSOCIATION ANALYSIS; GRAIN-YIELD;
D O I
10.1007/s00122-012-1939-y
中图分类号
S3 [农学(农艺学)];
学科分类号
0901 ;
摘要
A durum wheat consensus linkage map was developed by combining segregation data from six mapping populations. All of the crosses were derived from durum wheat cultivars, except for one accession of T. ssp. dicoccoides. The consensus map was composed of 1,898 loci arranged into 27 linkage groups covering all 14 chromosomes. The length of the integrated map and the average marker distance were 3,058.6 and 1.6 cM, respectively. The order of the loci was generally in agreement with respect to the individual maps and with previously published maps. When the consensus map was aligned to the deletion bin map, 493 markers were assigned to specific bins. Segregation distortion was found across many durum wheat chromosomes, with a higher frequency for the B genome. This high-density consensus map allowed the scanning of the genome for chromosomal rearrangements occurring during the wheat evolution. Translocations and inversions that were already known in literature were confirmed, and new putative rearrangements are proposed. The consensus map herein described provides a more complete coverage of the durum wheat genome compared with previously developed maps. It also represents a step forward in durum wheat genomics and an essential tool for further research and studies on evolution of the wheat genome.
引用
收藏
页码:1619 / 1638
页数:20
相关论文
共 69 条
  • [51] Constitutive differences in water use efficiency between two durum wheat cultivars
    Rizza, Fulvia
    Ghashghaie, Jaleh
    Meyer, Sylvie
    Matteu, Loredana
    Mastrangelo, Anna Maria
    Badeck, Franz-Werner
    [J]. FIELD CROPS RESEARCH, 2012, 125 : 49 - 60
  • [52] Röder MS, 1998, GENETICS, V149, P2007
  • [53] A major QTL for resistance to soil-borne cereal mosaic virus derived from an old Italian durum wheat cultivar
    Russo, Maria Anna
    Ficco, Donatella Bianca Maria
    Marone, Daniela
    De Vita, Pasquale
    Vallega, Victor
    Rubies-Autonell, Concepcion
    Ratti, Claudio
    Ferragonio, Pina
    Giovanniello, Valentina
    Pecchioni, Nicola
    Cattivelli, Luigi
    Mastrangelo, Anna Maria
    [J]. JOURNAL OF PLANT INTERACTIONS, 2012, 7 (04) : 290 - 300
  • [54] Distribution of DArT, AFLP, and SSR markers in a genetic linkage map of a doubled-haploid hexaploid wheat population
    Semagn, Kassa
    Bjornstad, Asmund
    Skinnes, Helge
    Maroy, Anne Guri
    Tarkegne, Yalew
    William, Manilal
    [J]. GENOME, 2006, 49 (05) : 545 - 555
  • [55] A high-density microsatellite consensus map for bread wheat (Triticum aestivum L.)
    Somers, DJ
    Isaac, P
    Edwards, K
    [J]. THEORETICAL AND APPLIED GENETICS, 2004, 109 (06) : 1105 - 1114
  • [56] Development and mapping of microsatellite (SSR) markers in wheat
    Song, QJ
    Shi, JR
    Singh, S
    Fickus, EW
    Costa, JM
    Lewis, J
    Gill, BS
    Ward, R
    Cregan, PB
    [J]. THEORETICAL AND APPLIED GENETICS, 2005, 110 (03) : 550 - 560
  • [57] Microsatellite-based deletion bin system for the establishment of genetic-physical map relationships in wheat ( Triticum aestivum L.)
    Sourdille, Pierre
    Singh, Sukhwinder
    Cadalen, Thierry
    Brown-Guedira, Gina L.
    Gay, Georges
    Qi, Lili
    Gill, Bikram S.
    Dufour, Philippe
    Murigneux, Alain
    Bernard, Michel
    [J]. FUNCTIONAL & INTEGRATIVE GENOMICS, 2004, 4 (01) : 12 - 25
  • [58] EST-derived SSR markers used as anchor loci for the construction of a consensus linkage map in ryegrass (Lolium spp.)
    Studer, Bruno
    Kolliker, Roland
    Muylle, Hilde
    Asp, Torben
    Frei, Ursula
    Roldan-Ruiz, Isabel
    Barre, Philippe
    Tomaszewski, Celine
    Meally, Helena
    Barth, Susanne
    Skot, Leif
    Armstead, Ian P.
    Dolstra, Oene
    Luebberstedt, Thomas
    [J]. BMC PLANT BIOLOGY, 2010, 10
  • [59] Breeding Technologies to Increase Crop Production in a Changing World
    Tester, Mark
    Langridge, Peter
    [J]. SCIENCE, 2010, 327 (5967) : 818 - 822
  • [60] High-throughput SNP discovery and genotyping in durum wheat (Triticum durum Desf.)
    Trebbi, Daniele
    Maccaferri, Marco
    de Heer, Peter
    Sorensen, Anker
    Giuliani, Silvia
    Salvi, Silvio
    Sanguineti, Maria Corinna
    Massi, Andrea
    van der Vossen, Edwin Andries Gerard
    Tuberosa, Roberto
    [J]. THEORETICAL AND APPLIED GENETICS, 2011, 123 (04) : 555 - 569