A high-density consensus map of A and B wheat genomes

被引:105
作者
Marone, Daniela [1 ]
Laido, Giovanni [1 ]
Gadaleta, Agata [2 ]
Colasuonno, Pasqualina [2 ]
Ficco, Donatella B. M. [1 ]
Giancaspro, Angelica [2 ]
Giove, Stefania [2 ]
Panio, Giosue [1 ]
Russo, Maria A. [1 ]
De Vita, Pasquale [1 ]
Cattivelli, Luigi [1 ,3 ]
Papa, Roberto [1 ]
Blanco, Antonio [2 ]
Mastrangelo, Anna M. [1 ]
机构
[1] CRA Cereal Res Ctr, I-71122 Foggia, Italy
[2] Univ Bari, Dept Agroforestry & Environm Biol & Chem, I-70126 Bari, Italy
[3] CRA Genom Res Ctr, I-29017 Fiorenzuola Darda, PC, Italy
关键词
GENETIC-LINKAGE MAP; ARRAYS TECHNOLOGY DART; TRITICUM-AESTIVUM L; SSR MARKERS; DIVERSITY ARRAYS; QTL ANALYSIS; BREAD WHEAT; HOMOEOLOGOUS GROUP-4; ASSOCIATION ANALYSIS; GRAIN-YIELD;
D O I
10.1007/s00122-012-1939-y
中图分类号
S3 [农学(农艺学)];
学科分类号
0901 ;
摘要
A durum wheat consensus linkage map was developed by combining segregation data from six mapping populations. All of the crosses were derived from durum wheat cultivars, except for one accession of T. ssp. dicoccoides. The consensus map was composed of 1,898 loci arranged into 27 linkage groups covering all 14 chromosomes. The length of the integrated map and the average marker distance were 3,058.6 and 1.6 cM, respectively. The order of the loci was generally in agreement with respect to the individual maps and with previously published maps. When the consensus map was aligned to the deletion bin map, 493 markers were assigned to specific bins. Segregation distortion was found across many durum wheat chromosomes, with a higher frequency for the B genome. This high-density consensus map allowed the scanning of the genome for chromosomal rearrangements occurring during the wheat evolution. Translocations and inversions that were already known in literature were confirmed, and new putative rearrangements are proposed. The consensus map herein described provides a more complete coverage of the durum wheat genome compared with previously developed maps. It also represents a step forward in durum wheat genomics and an essential tool for further research and studies on evolution of the wheat genome.
引用
收藏
页码:1619 / 1638
页数:20
相关论文
共 69 条
  • [1] Diversity arrays technology (DArT) for high-throughput profiling of the hexaploid wheat genome
    Akbari, Mona
    Wenzl, Peter
    Caig, Vanessa
    Carling, Jason
    Xia, Ling
    Yang, Shiying
    Uszynski, Grzegorz
    Mohler, Volker
    Lehmensiek, Anke
    Kuchel, Haydn
    Hayden, Mathew J.
    Howes, Neil
    Sharp, Peter
    Vaughan, Peter
    Rathmell, Bill
    Huttner, Eric
    Kilian, Andrzej
    [J]. THEORETICAL AND APPLIED GENETICS, 2006, 113 (08) : 1409 - 1420
  • [2] Chromosomal rearrangements in wheat: their types and distribution
    Badaeva, E. D.
    Dedkova, O. S.
    Gay, G.
    Pukhalskyi, V. A.
    Zelenin, A. V.
    Bernard, S.
    Bernard, M.
    [J]. GENOME, 2007, 50 (10) : 907 - 926
  • [3] A genetic linkage map of durum wheat
    Blanco, A
    Bellomo, MP
    Cenci, A
    De Giovanni, C
    D'Ovidio, R
    Iacono, E
    Laddomada, B
    Pagnotta, MA
    Porceddu, E
    Sciancalepore, A
    Simeone, R
    Tanzarella, OA
    [J]. THEORETICAL AND APPLIED GENETICS, 1998, 97 (5-6) : 721 - 728
  • [4] Blanco A, 2004, CELL MOL BIOL LETT, V9, P529
  • [5] Relationships between grain protein content and grain yield components through quantitative trait locus analyses in a recombinant inbred line population derived from two elite durum wheat cultivars
    Blanco, A.
    Mangini, G.
    Giancaspro, A.
    Giove, S.
    Colasuonno, P.
    Simeone, R.
    Signorile, A.
    De Vita, P.
    Mastrangelo, A. M.
    Cattivelli, L.
    Gadaleta, A.
    [J]. MOLECULAR BREEDING, 2012, 30 (01) : 79 - 92
  • [6] Quantitative trait loci for yellow pigment concentration and individual carotenoid compounds in durum wheat
    Blanco, Antonio
    Colasuonno, Pasqualina
    Gadaleta, Agata
    Mangini, Giacomo
    Schiavulli, Adalgisa
    Simeone, Rosanna
    Digesu, Anna Maria
    De Vita, Pasquale
    Mastrangelo, Anna Maria
    Cattivelli, Luigi
    [J]. JOURNAL OF CEREAL SCIENCE, 2011, 54 (02) : 255 - 264
  • [7] Association analysis as a strategy for improvement of quantitative traits in plants
    Breseghello, F
    Sorrells, ME
    [J]. CROP SCIENCE, 2006, 46 (03) : 1323 - 1330
  • [8] An intervarietal molecular marker map in Triticum aestivum L em Thell and comparison with a map from a wide cross
    Cadalen, T
    Boeuf, C
    Bernard, S
    Bernard, M
    [J]. THEORETICAL AND APPLIED GENETICS, 1997, 94 (3-4) : 367 - 377
  • [9] Molecular basis of evolutionary events that shaped the hardness locus in diploid and polyploid wheat species (Triticum and aegilops)
    Chantret, N
    Salse, J
    Sabot, F
    Rahman, S
    Bellec, A
    Laubin, B
    Dubois, I
    Dossat, C
    Sourdille, P
    Joudrier, P
    Gautier, MF
    Cattolico, L
    Beckert, M
    Aubourg, S
    Weissenbach, J
    Caboche, M
    Bernard, M
    Leroy, P
    Chalhoub, B
    [J]. PLANT CELL, 2005, 17 (04) : 1033 - 1045
  • [10] RFLP-BASED GENETIC MAPS OF WHEAT HOMOLOGOUS GROUP-7 CHROMOSOMES
    CHAO, S
    SHARP, PJ
    WORLAND, AJ
    WARHAM, EJ
    KOEBNER, RMD
    GALE, MD
    [J]. THEORETICAL AND APPLIED GENETICS, 1989, 78 (04) : 495 - 504