DEBkiss or the quest for the simplest generic model of animal life history

被引:77
作者
Jager, Tjalling [1 ]
Martin, Benjamin T. [2 ]
Zimmer, Elke I. [1 ]
机构
[1] Vrije Univ Amsterdam, Dept Theoret Biol, NL-1081 HV Amsterdam, Netherlands
[2] UFZ, Dept Ecol Modelling, Helmholtz Ctr Environm Res, D-04318 Leipzig, Germany
关键词
Dynamic energy budget; Life-history traits; Life cycle; Lymnaea stagnalis; ENERGY BUDGET THEORY; LYMNAEA-STAGNALIS-L; POPULATION-LEVEL; EGG SIZE; CONSEQUENCES; INDIVIDUALS; PARAMETERS; DYNAMICS; BIOLOGY; GROWTH;
D O I
10.1016/j.jtbi.2013.03.011
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Understanding the life cycle of individual animals, and how it responds to stress, requires a model that causally links life-history traits (feeding, growth, development and reproduction). Dynamic Energy Budget (DEB) theory offers a powerful and formalised framework for building process-based models for organism life cycles. However, it takes some serious investment to understand the resulting equations and to implement them into software, and a substantial amount of data to parameterise. For many practical applications, there is therefore a need for further simplification. Here, we present a simple and transparent model that fully specifies the life cycle of an (invertebrate) animal, applies a strict mass balance, and has direct access to the primary parameters that determine the metabolic processes. We derive our 'DEBkiss' in a formalised manner, starting from an explicit formulation of the simplifying assumptions. The presented model can serve as a teaching tool and a smooth introduction into the much richer world of DEB theory. Furthermore, the model may prove useful as a building block for individual-based population modelling (where simplicity of the blocks is essential), and for the analysis of toxicity data (where ease of model verification and parameterisation is crucial). The model is illustrated using a fit on growth and reproduction data for the pond snail (Lymnaea stagnalis) at three food levels, and subsequent predictions for embryonic growth and respiration (oxygen use), and weight loss on starvation, for the same species. (C) 2013 Elsevier Ltd. All rights reserved.
引用
收藏
页码:9 / 18
页数:10
相关论文
共 31 条
[1]   Developmental energetics of zebrafish, Danio rerio [J].
Augustine, S. ;
Gagnaire, B. ;
Floriani, M. ;
Adam-Guillermin, C. ;
Kooijman, S. A. L. M. .
COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY, 2011, 159 (03) :275-283
[2]  
Bernardo J, 1996, AM ZOOL, V36, P216
[3]   Costs of receipt and donation of ejaculates in a simultaneous hermaphrodite [J].
Hoffer, Jeroen N. A. ;
Ellers, Jacintha ;
Koene, Joris M. .
BMC EVOLUTIONARY BIOLOGY, 2010, 10
[4]   SAUERSTOFFVERBRAUCH UND TROCKENGEWICHT DER EMBRYONEN VON LYMNAEA-STAGNALIS-L [J].
HORSTMANN, HJ .
ZEITSCHRIFT FUR VERGLEICHENDE PHYSIOLOGIE, 1958, 41 (04) :390-404
[5]   Modelling nematode life cycles using dynamic energy budgets [J].
Jager, T ;
Alvarez, OA ;
Kammenga, JE ;
Kooijman, SALM .
FUNCTIONAL ECOLOGY, 2005, 19 (01) :136-144
[6]   Making sense of ecotoxicological test results: Towards application of process-based models [J].
Jager, Tjalling ;
Heugens, Evelyn H. W. ;
Kooijman, Sebastiaan A. L. M. .
ECOTOXICOLOGY, 2006, 15 (03) :305-314
[7]   Simplified Dynamic Energy Budget model for analysing ecotoxicity data [J].
Jager, Tjalling ;
Zimmer, Elke I. .
ECOLOGICAL MODELLING, 2012, 225 :74-81
[8]   General Unified Threshold Model of Survival - a Toxicokinetic-Toxicodynamic Framework for Ecotoxicology [J].
Jager, Tjalling ;
Albert, Carlo ;
Preuss, Thomas G. ;
Ashauer, Roman .
ENVIRONMENTAL SCIENCE & TECHNOLOGY, 2011, 45 (07) :2529-2540
[9]   Extrapolating toxic effects on individuals to the population level: the role of dynamic energy budgets [J].
Jager, Tjalling ;
Klok, Chris .
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2010, 365 (1557) :3531-3540
[10]   A biology-based approach for mixture toxicity of multiple endpoints over the life cycle [J].
Jager, Tjalling ;
Vandenbrouck, Tine ;
Baas, Jan ;
De Coen, Wim M. ;
Kooijman, Sebastiaan A. L. M. .
ECOTOXICOLOGY, 2010, 19 (02) :351-361