Detection in Japan of an equine-like G3P[8] reassortant rotavirus A strain that is highly homologous to European strains across all genome segments

被引:20
作者
Kikuchi, Wakako [1 ]
Nakagomi, Toyoko [2 ]
Gauchan, Punita [2 ]
Agbemabiese, Chantal Ama [2 ]
Noguchi, Atsuko [1 ]
Nakagomi, Osamu [2 ]
Takahashi, Tsutomu [1 ]
机构
[1] Akita Univ, Grad Sch Med, Dept Paediat, Akita, Japan
[2] Nagasaki Univ, Grad Sch Biomed Sci, Dept Mol Epidemiol, 1-12-4 Sakamoto, Nagasaki 8528523, Japan
关键词
G3; ROTAVIRUS; DS-1-LIKE; GASTROENTERITIS; CHILDREN; EMERGENCE; SPREAD;
D O I
10.1007/s00705-017-3668-7
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Equine-like G3P[8] rotavirus A strains with DS-1-like backbone genes have emerged since 2013. An equine-like RVA/Human-wt/JPN/15R429/2015/G3P[8] strain possessing I2-R2-C2-M2-A2-N2-T2-E2-H2 was detected in Japan in 2015. Its VP7 gene was ae<yen> 99.3% identical to those of equine-like G3P[4] strains detected in Japan, and the remaining 10 genes were 98.6-99.8% identical to G1P[8] double-gene reassortants detected in Japan, Thailand and the Philippines. Thus, 15R429 was likely generated through reassortment between the equine-like G3P[4] and G1P[8] reassortant strains. Notably, 15R429 was 98.5-99.8% identical across all 11 genes of the equine-like G3P[8] strains detected in Spain and Hungary in 2015.
引用
收藏
页码:791 / 794
页数:4
相关论文
共 13 条
[1]   Emergence and spread of G3P[8] rotaviruses possessing an equine-like VP7 and a DS-1-like genetic backbone in the Basque Country (North of Spain), 2015 [J].
Arana, Ainara ;
Montes, Milagrosa ;
Jere, Khuzwayo C. ;
Alkorta, Miriam ;
Iturriza-Gomara, Miren ;
Cilla, Gustavo .
INFECTION GENETICS AND EVOLUTION, 2016, 44 :137-144
[2]   Emergence of a novel equine-like G3P[8] inter-genogroup reassortant rotavirus strain associated with gastroenteritis in Australian children [J].
Cowley, Daniel ;
Donato, Celeste M. ;
Roczo-Farkas, Susie ;
Kirkwood, Carl D. .
JOURNAL OF GENERAL VIROLOGY, 2016, 97 :403-410
[3]   Changes in the distribution of lineage constellations of G2P[4] Rotavirus A strains detected in Japan over 32 years (1980-2011) [J].
Doan, Yen Hai ;
Nakagomi, Toyoko ;
Agbemabiese, Chantal Ama ;
Nakagomi, Osamu .
INFECTION GENETICS AND EVOLUTION, 2015, 34 :423-433
[4]   EQUINE-LIKE G3 ROTAVIRUS IN HUNGARY, 2015-IS IT A NOVEL INTERGENOGROUP REASSORTANT PANDEMIC STRAIN? [J].
Doro, Renata ;
Marton, Szilvia ;
Bartokne, Anett Horvath ;
Lengyel, Gyorgy ;
Agocs, Zsofia ;
Jakab, Ferenc ;
Banyai, Krisztian .
ACTA MICROBIOLOGICA ET IMMUNOLOGICA HUNGARICA, 2016, 63 (02) :243-255
[5]   Spread and predominance in Japan of novel G1P[8] double-reassortant rotavirus strains possessing a DS-1-like genotype constellation typical of G2P[4] strains [J].
Fujii, Yoshiki ;
Nakagomi, Toyoko ;
Nishimura, Naoko ;
Noguchi, Atsuko ;
Miura, Sinobu ;
Ito, Hisato ;
Doan, Yen Hai ;
Takahashi, Tsutomu ;
Ozaki, Takao ;
Katayama, Kazuhiko ;
Nakagomi, Osamu .
INFECTION GENETICS AND EVOLUTION, 2014, 28 :426-433
[6]   Effectiveness of rotavirus vaccines against hospitalisations in Japan [J].
Fujii, Yoshiyuki ;
Noguchi, Atsuko ;
Miura, Shinobu ;
Ishii, Haruka ;
Nakagomi, Toyoko ;
Nakagomi, Osamu ;
Takahashi, Tsutomu .
BMC PEDIATRICS, 2017, 17
[7]   Reassortment of Human and Animal Rotavirus Gene Segments in Emerging DS-1-Like G1P[8] Rotavirus Strains [J].
Komoto, Satoshi ;
Tacharoenmuang, Ratana ;
Guntapong, Ratigorn ;
Ide, Tomihiko ;
Tsuji, Takao ;
Yoshikawa, Tetsushi ;
Tharmaphornpilas, Piyanit ;
Sangkitporn, Somchai ;
Taniguchi, Koki .
PLOS ONE, 2016, 11 (02)
[8]   Emergence and Characterization of Unusual DS-1-Like G1P[8] Rotavirus Strains in Children with Diarrhea in Thailand [J].
Komoto, Satoshi ;
Tacharoenmuang, Ratana ;
Guntapong, Ratigorn ;
Ide, Tomihiko ;
Haga, Kei ;
Katayama, Kazuhiko ;
Kato, Takema ;
Ouchi, Yuya ;
Kurahashi, Hiroki ;
Tsuji, Takao ;
Sangkitporn, Somchai ;
Taniguchi, Koki .
PLOS ONE, 2015, 10 (11)
[9]   Human G3P[4] rotavirus obtained in Japan, 2013, possibly emerged through a human-equine rotavirus reassortment event [J].
Malasao, Rungnapa ;
Saito, Mayuko ;
Suzuki, Akira ;
Imagawa, Toshifumi ;
Nukiwa-Soma, Nao ;
Tohma, Kentaro ;
Liu, Xiaofang ;
Okamoto, Michiko ;
Chaimongkol, Natthawan ;
Dapat, Clyde ;
Kawamura, Kazuhisa ;
Kayama, Yasuko ;
Masago, Yoshifumi ;
Omura, Tatsuo ;
Oshitani, Hitoshi .
VIRUS GENES, 2015, 50 (01) :129-133
[10]   Evolution of DS-1-like G1P[8] double-gene reassortant rotavirus A strains causing gastroenteritis in children in Vietnam in 2012/2013 [J].
Nakagomi, Toyoko ;
Minh Quang Nguyen ;
Gauchan, Punita ;
Agbemabiese, Chantal Ama ;
Kaneko, Miho ;
Loan Phuong Do ;
Thiem Dinh Vu ;
Nakagomi, Osamu .
ARCHIVES OF VIROLOGY, 2017, 162 (03) :739-748