Complete mitochondrial genome of Pelteobagrus fulvidraco (Siluriformes: Bagridae): genome description and related phylogenetic analyses

被引:10
作者
Wan, Quan [1 ]
Qiao, Huiying [2 ,3 ]
Cheng, Qiqun [2 ]
Chen, Ying [2 ,3 ]
机构
[1] Anhui Agr Univ, Coll Anim Sci & Technol, Hefei, Peoples R China
[2] Chinese Acad Fishery Sci, East China Sea Fisheries Res Inst, Key Lab East China Sea & Ocean Fishery Resources, Minist Agr, Shanghai, Peoples R China
[3] Shanghai Ocean Univ, Coll Marine Sci, Shanghai, Peoples R China
来源
MITOCHONDRIAL DNA | 2014年 / 25卷 / 01期
关键词
Conservation genetics; evolutionary adaptation mechanisms; mitochondrial genome; Pelteobagrus fulvidraco; phylogeny; DNA SEQUENCE;
D O I
10.3109/19401736.2013.782015
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Pelteobagrus fulvidraco (yellow catfish) is a small-sized species in the family Bagridae, order Siluriformes. In this study, we determined the complete mitogenome sequence of P. fulvidraco and performed phylogenetic analysis with closely related species. The complete mitochondrial genome of P. fulvidraco was 16,527 bp in length, including 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes and 2 non-coding regions: control region (D-loop) and the origin of light-strand replication. We inferred that five markers in mitogenome, i.e. D-loop, ND5, 16SrRNA, COXI and ND1, may be suitable markers for studies on population genetics, phylogeny, conservation genetics and evolutionary adaptation mechanisms.
引用
收藏
页码:39 / 41
页数:3
相关论文
共 8 条
[1]   The complete sequence of the zebrafish (Danio rerio) mitochondrial genome and evolutionary patterns in vertebrate mitochondrial DNA [J].
Broughton, RE ;
Milam, JE ;
Roe, BA .
GENOME RESEARCH, 2001, 11 (11) :1958-1967
[2]   The complete mitochondrial genome sequence of Rastrelliger kanagurta (Perciformes: Scombridae) [J].
Chen, Ying ;
Cheng, Qiqun ;
Qiao, Huiying ;
Zhu, Yuxia ;
Chen, Wenming .
MITOCHONDRIAL DNA, 2013, 24 (02) :114-116
[3]  
Ding YW, 2005, THESIS HUAZHONG AGR
[4]   The complete mitochondrial DNA sequence of the Mekong giant catfish (Pangasianodon gigas), and the phylogenetic relationships among Siluriformes [J].
Jondeung, Amnuay ;
Sangthong, Pradit ;
Zardoya, Rafael .
GENE, 2007, 387 (1-2) :49-57
[5]   Mitochondrial DNA sequence of yellow catfish (Pelteobagrus fulvidraco) [J].
Liang, Hong-Wei ;
Hu, Guang-Fu ;
Li, Zhong ;
Zou, Gui-Wei ;
Liu, Xiao-Lin .
MITOCHONDRIAL DNA, 2012, 23 (03) :170-172
[6]   The complete mitochondrial genome of two recently derived species of the fish genus Nannoperca (Perciformes, Percichthyidae) [J].
Prosdocimi, Francisco ;
de Carvalho, Daniel Cardoso ;
de Almeida, Renan Nascimento ;
Beheregaray, Luciano B. .
MOLECULAR BIOLOGY REPORTS, 2012, 39 (03) :2767-2772
[7]   The complete mitochondrial genome sequence of Coilia ectenes (Clupeiformes: Engraulidae) [J].
Qiao, Huiying ;
Cheng, Qiqun ;
Chen, Ying ;
Chen, Wenming ;
Zhu, Yuxia .
MITOCHONDRIAL DNA, 2013, 24 (02) :123-125
[8]   MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods [J].
Tamura, Koichiro ;
Peterson, Daniel ;
Peterson, Nicholas ;
Stecher, Glen ;
Nei, Masatoshi ;
Kumar, Sudhir .
MOLECULAR BIOLOGY AND EVOLUTION, 2011, 28 (10) :2731-2739