Complete genome sequence of enterovirus 87 isolated from a child with acute flaccid paralysis in China in 2000

被引：4
作者：
Tao, Zexin [1 ]
Cui, Ning [2 ]
Xu, Aiqiang [1 ,3 ]
Ji, Feng [1 ]
Song, Lizhi [1 ]
Lin, Xiaojuan [1 ]
Xiong, Ping [1 ]
Wang, Haiyan [1 ]
Wang, Suting [1 ]
Chen, Peng [3 ]
Song, Yanyan [3 ]
机构：
[1] Shandong Ctr Dis Control & Prevent, Shandong Prov Key Lab Infect Dis Control & Preven, Jinan 250014, Peoples R China
[2] Shandong Univ Tradit Chinese Med, Coll Basic Med Sci, Dept Prevent Med, Jinan, Peoples R China
[3] Shandong Univ, Sch Publ Hlth, Jinan 250012, Peoples R China
来源：
VIRUS GENES | 2013年 / 47卷 / 01期
关键词：
Human enterovirus 87; Genome; Phylogenetic analysis; Recombination;
D O I：
10.1007/s11262-013-0910-6
中图分类号：
Q3 [遗传学];
学科分类号：
071007 ; 090102 ;
摘要：
Enterovirus 87 (EV87) is a new member of species Human Enterovirus B. So far, only the genome sequence of the prototype strain from Bangladesh is available. Here, we report the genome sequence of EV87 strain LY02/SD/CHN/2000 isolated from an acute flaccid paralysis case in Shandong Province, China, in 2000. It has a genome of 7423 nucleotides. Compared with the prototype strain, it had 80.3 % nucleotide and 95.5 % amino acid similarity in the VP1 coding region and 82.8 % complete genome similarity, reflecting distant genetic relationship between them. Phylogenetic analysis provided evidence of recombination with other serotypes in the P2 and P3 coding regions.
引用
收藏
页码：156 / 159
页数：4
相关论文
共 13 条
[1]   Molecular typing and epidemiology of non-polio enteroviruses isolated from Yunnan Province, the People's Republic of China [J].
Bingjun, Tian ;
Yoshida, Hirornu ;
Yan, Wu ;
Lin, Lu ;
Tsuji, Takao ;
Shimizu, Hiroyuki ;
Miyamura, Tatsuo .
JOURNAL OF MEDICAL VIROLOGY, 2008, 80 (04) :670-679
[2]  
Hall TA., 1999, NUCL ACIDS S SERIES, V41, P95, DOI DOI 10.14344/IOC.ML.11.1
[3]  
Knowles NJ., 2011, Virus Taxonomy: Classification and Nomenclature of Viruses: Ninth Report of the International Committee on Taxonomy of Viruses, P855
[4]   An automated genotyping tool for enteroviruses and noroviruses [J].
Kroneman, A. ;
Vennema, H. ;
Deforche, K. ;
v. d. Avoort, H. ;
Penaranda, S. ;
Oberste, S. ;
Vinje, J. ;
Koopmans, M. .
JOURNAL OF CLINICAL VIROLOGY, 2011, 51 (02) :121-125
[5]   Picornavirales, a proposed order of positive-sense single-stranded RNA viruses with a pseudo-T=3 virion architecture [J].
Le Gall, Olivier ;
Christian, Peter ;
Fauquet, Claude M. ;
King, Andrew M. Q. ;
Knowles, Nick J. ;
Nakashima, Nobuhiko ;
Stanway, Glyn ;
Gorbalenya, Alexander E. .
ARCHIVES OF VIROLOGY, 2008, 153 (04) :715-727
[6]   Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination [J].
Lole, KS ;
Bollinger, RC ;
Paranjape, RS ;
Gadkari, D ;
Kulkarni, SS ;
Novak, NG ;
Ingersoll, R ;
Sheppard, HW ;
Ray, SC .
JOURNAL OF VIROLOGY, 1999, 73 (01) :152-160
[7]   Molecular identification of 13 new enterovirus types, EV79-88, EV97, and EV100-101, members of the species Human Enterovirus B [J].
Oberste, A. Steven ;
Maher, Kaija ;
Nix, William A. ;
Michele, Suzanne M. ;
Uddin, Moyez ;
Schnurr, David ;
al-Busaidy, Suleiman ;
Akoua-Koffi, Chantal ;
Pallansch, Mark A. .
VIRUS RESEARCH, 2007, 128 (1-2) :34-42
[8]   Enteroviruses 76, 89, 90 and 91 represent a novel group within the species Human enterovirus A [J].
Oberste, MS ;
Maher, K ;
Michele, SM ;
Belliot, G ;
Uddin, M ;
Pallansch, MA .
JOURNAL OF GENERAL VIROLOGY, 2005, 86 :445-451
[9]   Molecular evolution of the human enteroviruses: Correlation of serotype with VP1 sequence and application to picornavirus classification [J].
Oberste, MS ;
Maher, K ;
Kilpatrick, DR ;
Pallansch, MA .
JOURNAL OF VIROLOGY, 1999, 73 (03) :1941-1948
[10]   Comparison of classic and molecular approaches for the identification of untypeable enteroviruses [J].
Oberste, MS ;
Maher, K ;
Flemister, MR ;
Marchetti, G ;
Kilpatrick, DR ;
Pallansch, MA .
JOURNAL OF CLINICAL MICROBIOLOGY, 2000, 38 (03) :1170-1174
12