Proteomic analysis of podocyte exosome-enriched fraction from normal human urine

被引:123
作者
Prunotto, Marco [1 ]
Farina, Annarita [2 ]
Lane, Lydie [3 ,4 ]
Pernin, Agnes [1 ]
Schifferli, Juerg [5 ]
Hochstrasser, Denis F. [2 ,6 ]
Lescuyer, Pierre [2 ,6 ]
Moll, Solange [1 ]
机构
[1] Univ Hosp Geneva, Inst Clin Pathol, CH-1211 Geneva, Switzerland
[2] Univ Geneva, Dept Human Prot Sci, Biomed Prote Res Grp, CH-1211 Geneva, Switzerland
[3] Swiss Inst Bioinformat, CALIPHO Grp, CH-1211 Geneva, Switzerland
[4] Univ Geneva, Dept Bioinformat & Struct Biol, CH-1211 Geneva, Switzerland
[5] Univ Basel Hosp, Dept Internal Med, CH-4031 Basel, Switzerland
[6] Univ Hosp Geneva, Dept Genet & Lab Med, Clin Prote Lab, CH-1211 Geneva, Switzerland
关键词
Proteomics; Urine; Podocyte vesicles; Exosomes; Cathecol-O-methyl transferase; c16orf89; FRONTOTEMPORAL LOBAR DEGENERATION; RAT JUXTAGLOMERULAR CELLS; GLOMERULAR PODOCYTES; MESSENGER-RNAS; LUNG-CANCER; IN-VITRO; DOPAMINE; PROTEIN; MEMBRANE; KIDNEY;
D O I
10.1016/j.jprot.2013.01.012
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Urine results from a coordinated activity of glomerular and tubular compartments of the kidney. As a footprint of these cellular functional processes, urinary exosomes, and 40-80 nm membrane vesicles released after fusion with the plasma membrane into the extracellular environment by renal epithelial cells, are a source for identification of proteins and investigation of their role in the kidney. The aim of the present study was the identification of podocyte exosome proteins based on urine immunoabsorption using podocyte-specific CR1-immunocoated beads followed by proteomic analysis using LC MS/MS techniques. This methodology allowed the identification of 1195 proteins. By using a bioinformatic approach, 27 brain-expressed proteins were identified, in which 14 out of them were newly demonstrated to be expressed in the kidney at a mRNA level, and, one of them, the COMT protein, was demonstrated to be expressed in podocytes at a protein level. These results, attesting the reliability of the methodology to identify podocyte proteins, need now to be completed by further experiments to analyze more precisely their biological function(s) in the podocytes. (C) 2013 Elsevier B.V. All rights reserved.
引用
收藏
页码:193 / 229
页数:37
相关论文
共 74 条
[1]   The human urinary proteome contains more than 1500 proteins, including a large proportion of membrane proteins [J].
Adachi, Jun ;
Kumar, Chanchal ;
Zhang, Yanling ;
Olsen, Jesper V. ;
Mann, Matthias .
GENOME BIOLOGY, 2006, 7 (09)
[2]   Initial Characterization of C16orf89, A Novel Thyroid-Specific Gene [J].
Afink, Gijs B. ;
Veenboer, Geertruda ;
de Randamie, Janine ;
Keijser, Remco ;
Meischl, Christof ;
Niessen, Hans ;
Ris-Stalpers, Carrie .
THYROID, 2010, 20 (07) :811-821
[3]  
[Anonymous], NUCL ACIDS RES
[4]   Selective modulation of the secretion of proteinases and their inhibitors by growth factors in cultured differentiated podocytes [J].
Asanuma, K ;
Shirato, I ;
Ishidoh, K ;
Kominami, E ;
Tomino, Y .
KIDNEY INTERNATIONAL, 2002, 62 (03) :822-831
[5]   DOPAMINE PRODUCTION BY ISOLATED GLOMERULI AND TUBULES FROM RAT KIDNEYS [J].
BAINES, AD ;
DRANGOVA, R ;
HATCHER, C .
CANADIAN JOURNAL OF PHYSIOLOGY AND PHARMACOLOGY, 1985, 63 (02) :155-158
[6]   Dopamine depolarizes podocytes via a D1-like receptor [J].
Bek, M ;
Fischer, KG ;
Greiber, S ;
Hupfer, C ;
Mundel, P ;
Pavenstädt, H .
NEPHROLOGY DIALYSIS TRANSPLANTATION, 1999, 14 (03) :581-587
[7]   Mutations in DHDPSL Are Responsible For Primary Hyperoxaluria Type III [J].
Belostotsky, Ruth ;
Seboun, Eric ;
Idelson, Gregory H. ;
Milliner, Dawn S. ;
Becker-Cohen, Rachel ;
Rinat, Choni ;
Monico, Carla G. ;
Feinstein, Sofia ;
Ben-Shalom, Efrat ;
Magen, Daniella ;
Weissman, Irith ;
Charon, Celine ;
Frishberg, Yaacov .
AMERICAN JOURNAL OF HUMAN GENETICS, 2010, 87 (03) :392-399
[8]  
BRADFORD MM, 1976, ANAL BIOCHEM, V72, P248, DOI 10.1016/0003-2697(76)90527-3
[9]   Tubular Transport: Core Curriculum 2010 [J].
Christov, Marta ;
Alper, Seth L. .
AMERICAN JOURNAL OF KIDNEY DISEASES, 2010, 56 (06) :1202-1217
[10]   Nephrin is critical for the action of insulin on human glomerular podocytes [J].
Coward, Richard J. M. ;
Welsh, Gavin I. ;
Koziell, Ania ;
Hussain, Sagair ;
Lennon, Rachel ;
Ni, Lan ;
Tavare, Jeremy M. ;
Mathieson, Peter W. ;
Saleem, Moin A. .
DIABETES, 2007, 56 (04) :1127-1135