Beyond Natural Language Processing: Building Knowledge Graphs to Assist Scientists Understand COVID-19 Concepts

To combat COVID-19, scientists must digest the vast amount of relevant biomedical knowledge in the literature to understand disease mechanisms and related biological functions. Nearly 3,000 scientific papers are published on PubMed every day. This knowledge bottleneck has resulted in severe delays in developing COVID-19 vaccines and drugs. Our research produces a hierarchy of knowledge concepts related to COVID-19, designed to assist scientists in answering questions and generating summaries. It aims to discover scientific and comprehensive knowledge to extract fine-grained multimedia elements (i.e., physical and visual structures, relational events and events, and chemical knowledge). Our project is toward one step in natural language understanding: detailed contextual sentences, subgraphs, and knowledge subgraphs are the first time to be automatically generated, and relations and coreferences of COVID-19 mentions will be sketched. Extensive results show that our method outperforms other state-of-the-art methods. In addition, we have published the generated knowledge graph on Google Drive1 and released the source in the Github2.