Wavelet analysis in ecology and epidemiology: impact of statistical tests

被引:74
作者
Cazelles, Bernard [1 ,2 ]
Cazelles, Kevin [1 ]
Chavez, Mario
机构
[1] UPMC, Ecole Normale Super, UMR 7625, F-75230 Paris 05, France
[2] UPMC, IRD, UMMISCO UMI 209, F-93142 Bondy, France
关键词
wavelet analysis; statistical testing; ecology; epidemiology; TIME-SERIES; TRAVELING-WAVES; POPULATION-DYNAMICS; CLIMATE; CHINA; SYNCHRONY; THAILAND; MODELS; NOISE;
D O I
10.1098/rsif.2013.0585
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Wavelet analysis is now frequently used to extract information from ecological and epidemiological time series. Statistical hypothesis tests are conducted on associated wavelet quantities to assess the likelihood that they are due to a random process. Such random processes represent null models and are generally based on synthetic data that share some statistical characteristics with the original time series. This allows the comparison of null statistics with those obtained from original time series. When creating synthetic datasets, different techniques of resampling result in different characteristics shared by the synthetic time series. Therefore, it becomes crucial to consider the impact of the resampling method on the results. We have addressed this point by comparing seven different statistical testing methods applied with different real and simulated data. Our results show that statistical assessment of periodic patterns is strongly affected by the choice of the resampling method, so two different resampling techniques could lead to two different conclusions about the same time series. Moreover, our results clearly show the inadequacy of resampling series generated by white noise and red noise that are nevertheless the methods currently used in the wide majority of wavelets applications. Our results highlight that the characteristics of a time series, namely its Fourier spectrum and autocorrelation, are important to consider when choosing the resampling technique. Results suggest that data-driven resampling methods should be used such as the hidden Markov model algorithm and the 'beta-surrogate' method.
引用
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页数:10
相关论文
共 43 条
  • [1] [Anonymous], 1993, An introduction to the bootstrap
  • [2] [Anonymous], 1992, ANAL POPULATION ECOL
  • [3] Identification of Chinese plague foci from long-term epidemiological data
    Ben-Ari, Tamara
    Neerinckx, Simon
    Agier, Lydiane
    Cazelles, Bernard
    Xu, Lei
    Zhang, Zhibin
    Fang, Xiye
    Wang, Shuchun
    Liu, Qiyong
    Stenseth, Nils C.
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2012, 109 (21) : 8196 - 8201
  • [4] CHARACTERIZING CANOPY GAP STRUCTURE IN FORESTS USING WAVELET ANALYSIS
    BRADSHAW, GA
    SPIES, TA
    [J]. JOURNAL OF ECOLOGY, 1992, 80 (02) : 205 - 215
  • [5] Large-scale comparative analysis of pertussis population dynamics:: Periodicity, synchrony, and impact of vaccination
    Broutin, H
    Guégan, JF
    Elguero, E
    Simondon, F
    Cazelles, B
    [J]. AMERICAN JOURNAL OF EPIDEMIOLOGY, 2005, 161 (12) : 1159 - 1167
  • [6] Symbolic dynamics for identifying similarity between rhythms of ecological time series
    Cazelles, B
    [J]. ECOLOGY LETTERS, 2004, 7 (09) : 755 - 763
  • [7] Detection of imperfect population synchrony in an uncertain world
    Cazelles, B
    Stone, L
    [J]. JOURNAL OF ANIMAL ECOLOGY, 2003, 72 (06) : 953 - 968
  • [8] Nonstationary influence of El Nino on the synchronous dengue epidemics in Thailand
    Cazelles, B
    Chavez, M
    McMichael, AJ
    Hales, S
    [J]. PLOS MEDICINE, 2005, 2 (04) : 313 - 318
  • [9] Wavelet analysis of ecological time series
    Cazelles, Bernard
    Chavez, Mario
    Berteaux, Dominique
    Menard, Frederic
    Vik, Jon Olav
    Jenouvrier, Stephanie
    Stenseth, Nils C.
    [J]. OECOLOGIA, 2008, 156 (02) : 287 - 304
  • [10] Infectious diseases, climate influences, and nonstationarity
    Cazelles, Bernard
    Hales, Simon
    [J]. PLOS MEDICINE, 2006, 3 (08) : 1212 - 1213