Genetic polymorphisms in 12 autosomal STRs in a Shanghai Han population from China

被引:13
作者
Zhang, Suhua [1 ]
Zhang, Zheren [2 ]
Zhao, Shumin [1 ]
Zhao, Zhenmin [1 ]
Li, Chengtao [1 ]
机构
[1] Minist Justice, Inst Forens Sci, Shanghai Key Lab Forens Med, Shanghai 200063, Peoples R China
[2] Qiagen China Co Ltd, Beijing, Peoples R China
关键词
Forensic genetics; Genetic polymorphism; Mutation; STR; TANDEM REPEAT; LOCI; POLAND; SE33;
D O I
10.1002/elps.201200423
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
In this study, a total of 484 unrelated healthy individuals and 359 two-generation families in the Han population in Shanghai, China were successfully analyzed with the Investigator HDplex Kit (Qiagen, Hilden, Germany). HardyWeinberg equilibrium tests demonstrated no significant deviation from expected values (p > 0.05) for the 12 autosomal STRs included in this kit. A total of 173 alleles were detected in 12 autosomal STR loci; the largest number of alleles (32) was detected for the SE33 locus. The combined power of discrimination was 0.99999999992. The combined mean exclusion chance in duo cases was 0.99982, whereas the combined mean exclusion chance in trio cases was 0.9999986. The average mutation rate across all loci was 0.0023 (95% confidence intervals: 0.00130.0039). These results suggest that the 12 autosomal STR loci can provide highly informative polymorphic data for paternity testing and forensic identification in the Han population in Shanghai, China.
引用
收藏
页码:613 / 617
页数:5
相关论文
共 17 条
[1]  
Asamura H, 2008, J Forensic Leg Med, V15, P519, DOI 10.1016/j.jflm.2008.04.001
[2]   New alleles and mutational events at 14 STR loci from different German populations [J].
Becker, Dorit ;
Bender, Klaus ;
Edelmann, Jeanett ;
Goetz, Frank ;
Henke, Lotte ;
Hering, Sandra ;
Hohoff, Carsten ;
Hoppe, Karolin ;
Klintschar, Michael ;
Muche, Matthias ;
Rolf, Burkhard ;
Szibor, Reinhard ;
Weirich, Volker ;
Jung, Martin ;
Brabetz, Werner .
FORENSIC SCIENCE INTERNATIONAL-GENETICS, 2007, 1 (3-4) :232-237
[3]   Mutation rate in human microsatellites:: Influence of the structure and length of the tandem repeat [J].
Brinkmann, B ;
Klintschar, M ;
Neuhuber, F ;
Hühne, J ;
Rolf, B .
AMERICAN JOURNAL OF HUMAN GENETICS, 1998, 62 (06) :1408-1415
[4]   Arlequin (version 3.0): An integrated software package for population genetics data analysis [J].
Excoffier, Laurent ;
Laval, Guillaume ;
Schneider, Stefan .
EVOLUTIONARY BIOINFORMATICS, 2005, 1 :47-50
[5]   AUTOMATED SHORT TANDEM REPEAT (STR) ANALYSIS IN FORENSIC CASEWORK - A STRATEGY FOR THE FUTURE [J].
GILL, P ;
KIMPTON, CP ;
URQUHART, A ;
OLDROYD, N ;
MILLICAN, ES ;
WATSON, SK ;
DOWNES, TJ .
ELECTROPHORESIS, 1995, 16 (09) :1543-1552
[6]   Sequence variations in the primer binding regions of the highly polymorphic STR system SE33 [J].
Hering, S ;
Edelmann, J ;
Dressler, J .
INTERNATIONAL JOURNAL OF LEGAL MEDICINE, 2002, 116 (06) :365-367
[7]   Fourteen non-CODIS autosomal short tandem repeat loci multiplex data from Taiwanese [J].
Hwa, Hsiao-Lin ;
Chang, Yih-Yuan ;
Lee, James Chun-I ;
Yin, Hsiang-Yi ;
Tseng, Li-Hui ;
Su, Yi-Ning ;
Ko, Tsang-Ming .
INTERNATIONAL JOURNAL OF LEGAL MEDICINE, 2011, 125 (02) :219-226
[8]   Allele frequencies of the new European Standard Set (ESS) loci plus SE33 locus in a population from the Republic of Macedonia [J].
Jakovski, Zlatko ;
Nikolova, Ksenija ;
Jankova-Ajanovska, Renata ;
Janeska, Biljana ;
Pojskic, Naris ;
Marjanovic, Damir .
FORENSIC SCIENCE INTERNATIONAL-GENETICS, 2012, 6 (03) :E90-E92
[9]   Validation of nine non-CODIS STR loci for forensic use in a population from Central Poland [J].
Kuzniar, Piotr ;
Jastrzebska, Emilia ;
Ploski, Rafal .
FORENSIC SCIENCE INTERNATIONAL, 2006, 159 (2-3) :258-260
[10]   Genetic data of nine non-CODIS STRs in Chinese Han population from Guangdong Province, Southern China [J].
Lu, De-Jian ;
Liu, Qiu-Ling ;
Zhao, Hu .
INTERNATIONAL JOURNAL OF LEGAL MEDICINE, 2011, 125 (01) :133-137