Structural Basis for the Recognition of Ubc13 by the Shigella flexneri Effector Ospl

被引:22
作者
Nishide, Akira [1 ]
Kim, Minsoo [2 ]
Takagi, Kenji [1 ]
Himeno, Ai [2 ]
Sanada, Takahito [3 ]
Sasakawa, Chihiro [2 ,4 ]
Mizushima, Tsunehiro [1 ]
机构
[1] Univ Hyogo, Grad Sch Life Sci, Dept Life Sci, Picobiol Inst, Kamigori Cho, Hyogo 6781297, Japan
[2] Univ Tokyo, Div Bacterial Infect Biol, Inst Med Sci, Minato Ku, Tokyo 1088639, Japan
[3] Univ Tokyo, Div Bacteriol, Dept Infect Dis Control, Int Res Ctr Infect Dis,Inst Med Sci,Minato Ku, Tokyo 1088639, Japan
[4] Nippon Inst Biol Sci, Ome, Tokyo 1980024, Japan
关键词
Shigella flexneri; Ubc13; deamidase; ubiquitination; crystal structure; CRYSTAL-STRUCTURE; NEDD8; DEAMIDATION; UBIQUITIN LIGASE; MOLECULAR-BASIS; CRYSTALLOGRAPHY; INHIBITION; MECHANISM; OTUB1;
D O I
10.1016/j.jmb.2013.02.037
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Ubc13 is a ubiquitin-conjugating enzyme that plays a key role in the nuclear factor-kappa B signal transduction pathway in human diseases. The Shigella flexneri effector OspI affects inflammatory responses by catalyzing the deamidation of a specific glutamine residue at position 100 in Ubc13 during infection. This modification prevents the activation of the TNF (tumor necrosis factor) receptor-associated factor 6, leading to modulation of the diacylglycerol-CBM (CARD-Bcl10-Malt1) complex-TNF receptor-associated factor 6-nuclear factor-kappa B signaling pathway. To elucidate the structural basis of OspI function, we determined the crystal structures of the catalytically inert OspI C62A mutant and its complex with Ubc13 at resolutions of 3.0 and 2.96 angstrom, respectively. The structure of the OspI-Ubc13 complex revealed that the interacting surfaces between OspI and Ubc13 are a hydrophobic surface and a complementary charged surface. Furthermore, we predict that the complementary charged surface of OspI plays a key role in substrate specificity determination. (C) 2013 Elsevier Ltd. All rights reserved.
引用
收藏
页码:2623 / 2631
页数:9
相关论文
共 30 条
[11]   OTUB1 Co-opts Lys48-Linked Ubiquitin Recognition to Suppress E2 Enzyme Function [J].
Juang, Yu-Chi ;
Landry, Marie-Claude ;
Sanches, Mario ;
Vittal, Vinayak ;
Leung, Charles C. Y. ;
Ceccarelli, Derek F. ;
Mateo, Abigail-Rachele F. ;
Pruneda, Jonathan N. ;
Mao, Daniel Y. L. ;
Szilard, Rachel K. ;
Orlicky, Stephen ;
Munro, Meagan ;
Brzovic, Peter S. ;
Klevit, Rachel E. ;
Sicheri, Frank ;
Durocher, Daniel .
MOLECULAR CELL, 2012, 45 (03) :384-397
[12]   Bacterial Interactions with the Host Epithelium [J].
Kim, Minsoo ;
Ashida, Hiroshi ;
Ogawa, Michinaga ;
Yoshikawa, Yuko ;
Mimuro, Hitomi ;
Sasakawa, Chihiro .
CELL HOST & MICROBE, 2010, 8 (01) :20-35
[13]   Presenting your structures: the CCP4mg molecular-graphics software [J].
McNicholas, S. ;
Potterton, E. ;
Wilson, K. S. ;
Noble, M. E. M. .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2011, 67 :386-394
[14]   Crystal structure of the human ubiquitin conjugating enzyme complex, hMms2-hUbc13 [J].
Moraes, TF ;
Edwards, RA ;
McKenna, S ;
Pastushok, L ;
Xiao, W ;
Glover, JNM ;
Ellison, MJ .
NATURE STRUCTURAL BIOLOGY, 2001, 8 (08) :669-673
[15]   Refinement of macromolecular structures by the maximum-likelihood method [J].
Murshudov, GN ;
Vagin, AA ;
Dodson, EJ .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 1997, 53 :240-255
[16]   Processing of X-ray diffraction data collected in oscillation mode [J].
Otwinowski, Z ;
Minor, W .
MACROMOLECULAR CRYSTALLOGRAPHY, PT A, 1997, 276 :307-326
[17]   Regulatory ubiquitylation in response to DNA double-strand breaks [J].
Panier, Stephanie ;
Durocher, Daniel .
DNA REPAIR, 2009, 8 (04) :436-443
[18]   Type III secretion effectors of the IpaH family are E3 ubiquitin ligases [J].
Rohde, John R. ;
Breitkreutz, Ashton ;
Chenal, Alexandre ;
Sansonetti, Philippe J. ;
Parsot, Claude .
CELL HOST & MICROBE, 2007, 1 (01) :77-83
[19]   The Shigella flexneri effector OspI deamidates UBC13 to dampen the inflammatory response [J].
Sanada, Takahito ;
Kim, Minsoo ;
Mimuro, Hitomi ;
Suzuki, Masato ;
Ogawa, Michinaga ;
Oyama, Akiho ;
Ashida, Hiroshi ;
Kobayashi, Taira ;
Koyama, Tomohiro ;
Nagai, Shinya ;
Shibata, Yuri ;
Gohda, Jin ;
Inoue, Jun-ichiro ;
Mizushima, Tsunehiro ;
Sasakawa, Chihiro .
NATURE, 2012, 483 (7391) :623-U149
[20]   Molecular Basis of Lys-63-linked Polyubiquitination Inhibition by the Interaction between Human Deubiquitinating Enzyme OTUB1 and Ubiquitin-conjugating Enzyme UBC13 [J].
Sato, Yusuke ;
Yamagata, Atsushi ;
Goto-Ito, Sakurako ;
Kubota, Keiko ;
Miyamoto, Rikako ;
Nakada, Shinichiro ;
Fukai, Shuya .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2012, 287 (31) :25860-25868