Towards an integrated ecosystem of R packages for the analysis of population genetic data

被引：9

作者：

Paradis, Emmanuel ^{[1
]}

Gosselin, Thierry ^{[2
]}

Grunwald, Niklaus J. ^{[3
,4
]}

Jombart, Thibaut ^{[5
]}

Manel, Stephanie ^{[6
]}

Lapp, Hilmar ^{[7
]}

机构：

[1] Univ Montpellier, CNRS, IRD, Inst Sci Evolut,EPHE, Pl Eugene Bataillon CC 065, F-34095 Montpellier 05, France

[2] Univ Laval, IBIS, Quebec City, PQ G1V 0A6, Canada

[3] USDA ARS, Hort Crops Res Unit, Corvallis, OR 97330 USA

[4] Oregon State Univ, Dept Bot & Plant Pathol, Corvallis, OR 97331 USA

[5] Imperial Coll, Sch Publ Hlth, Dept Infect Dis Epidemiol, MRC Ctr Outbreak Anal & Modelling, London W2 1PG, England

[6] PSL Res Univ, EPHE, CNRS, UM,SupAgro,IRD,INRA,UMR 5175, F-34293 Montpellier Cefe, France

[7] Duke Univ, Ctr Genom & Computat Biol GCB, 101 Sci Dr, Durham, NC 27708 USA

来源：

MOLECULAR ECOLOGY RESOURCES | 2017年 / 17卷 / 01期

关键词：

allelic data; NGS data; R; variant call format; GENOMICS;

D O I：

10.1111/1755-0998.12636

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

引用

页码：1 / 4

页数：4

共 33 条

[1]

Archer FI, 2017, MOL ECOLOGY RESOURCE, V17, P5

[2] The variant call format and VCFtools [J].

Danecek, Petr ;

Auton, Adam ;

Abecasis, Goncalo ;

Albers, Cornelis A. ;

Banks, Eric ;

DePristo, Mark A. ;

Handsaker, Robert E. ;

Lunter, Gerton ;

Marth, Gabor T. ;

Sherry, Stephen T. ;

McVean, Gilean ;

Durbin, Richard .

BIOINFORMATICS, 2011, 27 (15) :2156-2158

[3]

DePrenger-Levin M, 2017, MOL ECOLOGY RESOURCE, V17, P101

[4]

Dray S., 2007, R NEWS, V7, P47, DOI DOI 10.1159/000323281

[5] Genome sequencing and population genomics in non-model organisms [J].

Ellegren, Hans .

TRENDS IN ECOLOGY & EVOLUTION, 2014, 29 (01) :51-63

[6]

Fisher R. A., 1930, GENETICAL THEORY NAT

[7] Better forecasts of range dynamics using genetic data [J].

Fordham, Damien A. ;

Brook, Barry W. ;

Moritz, Craig ;

Nogues-Bravo, David .

TRENDS IN ECOLOGY & EVOLUTION, 2014, 29 (08) :436-443

[8]

Francis RM, 2017, MOL ECOLOGY RESOURCE, V17, P27

[9]

Gautier M, 2017, REHH 2 0 REIMPLEMENT, V17, P78

[10] Science hackathons for developing interdisciplinary research and collaborations [J].

Groen, Derek ;

Calderhead, Ben .

ELIFE, 2015, 4

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