Systems-informed genome mining for electroautotrophic microbial production

被引:8
|
作者
Abel, Anthony J. [1 ]
Hilzinger, Jacob M. [2 ]
Arkin, Adam P. [2 ,3 ]
Clark, Douglas S. [1 ,4 ]
机构
[1] Univ Calif Berkeley, Dept Chem & Biomol Engn, Berkeley, CA 94720 USA
[2] Univ Calif Berkeley, Dept Bioengn, Berkeley, CA 94720 USA
[3] Lawrence Berkeley Natl Lab, Environm Genom & Syst Biol Div, 1 Cyclotron Rd, Berkeley, CA 94720 USA
[4] Lawrence Berkeley Natl Lab, Mol Biophys & Integrated Bioimaging Div, 1 Cyclotron Rd, Berkeley, CA 94720 USA
关键词
Electromicrobial production; Genome mining; Multiphysics modeling; Microbial electrosynthesis; Extracellular electron transfer; CO2; REDUCTION; ELECTROCHEMICAL REDUCTION; GENETIC SYSTEM; GROWTH; ABUNDANCE; STRAIN; ELECTROSYNTHESIS; EFFICIENCIES; PERFORMANCE; METABOLISM;
D O I
10.1016/j.bioelechem.2022.108054
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Electromicrobial production (EMP) systems can store renewable energy and CO2 in many-carbon molecules inaccessible to abiotic electrochemistry. Here, we develop a multiphysics model to investigate the fundamental and practical limits of EMP enabled by direct electron uptake. We also identify potential electroautotrophic organisms and metabolic engineering strategies to enable electroautotrophy in organisms lacking the native capability. Systematic model comparisons of microbial respiration and carbon fixation strategies revealed that, under aerobic conditions, the CO2 fixation rate is limited to < 6 lmol/cm(2)/ hr by O(2 )mass transport despite efficient electron utilization. In contrast, anaerobic nitrate respiration enables CO2 fixation rates > 50 lmol/cm(2)/hr for microbes using the reductive tricarboxylic acid cycle. Phylogenetic analysis, validated by recapitulating experimental demonstrations of electroautotrophy, predicted multiple probable electroautotrophic organisms and a significant number of genetically tractable strains that require heterologous expression of < 5 proteins to gain electroautotrophic function. The model and analysis presented here will guide microbial engineering and reactor design for practical EMP systems. (C)& nbsp;2022 Published by Elsevier B.V.
引用
收藏
页数:14
相关论文
共 50 条
  • [1] Improving electroautotrophic ammonium production from nitrogen gas by simultaneous carbon dioxide fixation in a dual-chamber microbial electrolysis cell
    Zhang, Lixia
    Tian, Chang
    Wang, Haoran
    Gu, Wenzhi
    Zheng, Decong
    Cui, Mengyao
    Wang, Xiaomei
    He, Xiaohong
    Zhan, Guoqiang
    Li, Daping
    BIOELECTROCHEMISTRY, 2022, 144
  • [2] Systems-Informed PERMA + 4: Measuring Well-being and Performance at the Employee, Team, and Supervisor Levels
    Donaldson S.I.
    Donaldson S.I.
    McQuaid M.
    Kern M.L.
    International Journal of Applied Positive Psychology, 2024, 9 (2) : 1153 - 1166
  • [3] A light-management film layer induces dramatically enhanced acetate production in photo-assisted microbial electrosynthesis systems
    Kong, Weifeng
    Huang, Liping
    Quan, Xie
    Li Puma, Gianluca
    APPLIED CATALYSIS B-ENVIRONMENT AND ENERGY, 2023, 324
  • [4] Microbial genome mining for accelerated natural products discovery: is a renaissance in the making?
    Bachmann, Brian O.
    Van Lanen, Steven G.
    Baltz, Richard H.
    JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY, 2014, 41 (02) : 175 - 184
  • [5] GeM-Pro: a tool for genome functional mining and microbial profiling
    Torres Manno, Mariano A.
    Pizarro, Maria D.
    Prunello, Marcos
    Magni, Christian
    Daurelio, Lucas D.
    Espariz, Martin
    APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 2019, 103 (07) : 3123 - 3134
  • [6] Biochemical production with microbial bioelectrochemical systems
    Boto, Santiago
    Cristiani, Lorenzo
    Rosenbaum, Miriam A.
    CURRENT OPINION IN BIOTECHNOLOGY, 2025, 93
  • [7] Systems-informed PERMA+4 and psychological safety: predicting work-related well-being and performance across an international sample
    Donaldson, Scott I.
    Donaldson, Stewart I.
    McQuaid, Michelle
    Kern, Margaret L.
    JOURNAL OF POSITIVE PSYCHOLOGY, 2024,
  • [8] Targeted genome mining for microbial antitumor agents acting through DNA intercalation
    Zhao, Zhijie
    Zhao, Guiyun
    Chai, Yi
    Li, Wei
    Song, Kaihui
    Zhao, Wenbin
    Li, Hairong
    Wu, Miaolian
    Zhou, Zhan
    Du, Yi-Ling
    SYNTHETIC AND SYSTEMS BIOTECHNOLOGY, 2023, 8 (03) : 520 - 526
  • [9] Genome mining of Pseudomonas spp. hints towards the production of under-pitched secondary metabolites
    Shahid, Izzah
    Han, Jun
    Hanook, Sharoon
    Borchers, Christoph H. H.
    El Enshasy, Hesham Ali
    Mehnaz, Samina
    3 BIOTECH, 2023, 13 (06)
  • [10] Enhancing electron transfer efficiency in microbial electrochemical systems for bioelectricity and chemical production
    Liang, Guangjie
    Gao, Cong
    Wu, Jing
    Hu, Guipeng
    Li, Xiaomin
    Liu, Liming
    BIORESOURCE TECHNOLOGY, 2025, 428