Use of Overlapping Group LASSO Sparse Deep Belief Network to Discriminate Parkinson's Disease and Normal Control

被引:25
作者
Shen, Ting [1 ]
Jiang, Jiehui [1 ,2 ]
Lin, Wei [3 ]
Ge, Jingjie [4 ]
Wu, Ping [4 ]
Zhou, Yongjin [1 ]
Zuo, Chuantao [4 ,5 ,6 ]
Wang, Jian [7 ]
Yan, Zhuangzhi [1 ]
Shi, Kuangyu [8 ,9 ]
机构
[1] Shanghai Univ, Shanghai Inst Adv Commun & Data Sci, Shanghai, Peoples R China
[2] Shanghai Univ, Key Lab Specialty Fiber Opt & Opt Access Networks, Joint Int Res Lab Specialty Fiber Opt & Adv Commu, Shanghai, Peoples R China
[3] Anhui Med Univ, Hosp PLA 904, Dept Neurosurg, Wuxi, Peoples R China
[4] Fudan Univ, Huashan Hosp, PET Ctr, Shanghai, Peoples R China
[5] Fudan Univ, Inst Funct & Mol Med Imaging, Shanghai, Peoples R China
[6] Fudan Univ, Human Phenome Inst, Shanghai, Peoples R China
[7] Fudan Univ, Huashan Hosp, Dept Neurol, Shanghai, Peoples R China
[8] Univ Hosp Bern, Dept Nucl Med, Bern, Switzerland
[9] Tech Univ Munich, Dept Nucl Med, Munich, Germany
基金
中国国家自然科学基金;
关键词
Parkinson's disease; Deep Belief Network; overlapping group LASSO; sparse representation; deep learning; early diagnose; NONLINEAR DIMENSIONALITY REDUCTION; DIFFERENTIAL-DIAGNOSIS; FDG-PET; CLASSIFICATION;
D O I
10.3389/fnins.2019.00396
中图分类号
Q189 [神经科学];
学科分类号
071006 ;
摘要
As a medical imaging technology which can show the metabolism of the brain, 18F-fluorodeoxyglucose (FDG)-positron emission tomography (PET) is of great value for the diagnosis of Parkinson's Disease (PD). With the development of pattern recognition technology, analysis of brain images using deep learning are becoming more and more popular. However, existing computer-aided-diagnosis technologies often over fit and have poor generalizability. Therefore, we aimed to improve a framework based on Group Lasso Sparse Deep Belief Network (GLS-DBN) for discriminating PD and normal control (NC) subjects based on FDG-PET imaging. In this study, 225 NC and 125 PD cohorts from Huashan and Wuxi 904 hospitals were selected. They were divided into the training & validation dataset and 2 test datasets. First, in the training & validation set, subjects were randomly partitioned 80: 20, with multiple training iterations for the deep learning model. Next, Locally Linear Embedding was used as a dimension reduction algorithm. Then, GLS-DBN was used for feature learning and classification. Different sparse DBN models were used to compare datasets to evaluate the effectiveness of our framework. Accuracy, sensitivity, and specificity were examined to validate the results. Output variables of the network were also correlated with longitudinal changes of rating scales about movement disorders (UPDRS, H&Y). As a result, accuracy of prediction (90% in Test 1, 86% in Test 2) for classification of PD and NC patients outperformed conventional approaches. Output scores of the network were strongly correlated with UPDRS and H&Y (R = 0.705, p < 0.001; R = 0.697, p < 0.001 in Test 1; R = 0.592, p = 0.0018, R = 0.528, p = 0.0067 in Test 2). These results show the GLS-DBN is feasible method for early diagnosis of PD.
引用
收藏
页数:12
相关论文
共 45 条
[21]   Multimodal Neuroimaging Feature Learning for Multiclass Diagnosis of Alzheimer's Disease [J].
Liu, Siqi ;
Liu, Sidong ;
Cai, Weidong ;
Che, Hangyu ;
Pujol, Sonia ;
Kikinis, Ron ;
Feng, Dagan ;
Fulham, Michael J. .
IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING, 2015, 62 (04) :1132-1140
[22]   Group Guided Sparse Group Lasso Multi-task Learning for Cognitive Performance Prediction of Alzheimer's Disease [J].
Liu, Xiaoli ;
Cao, Peng ;
Yang, Jinzhu ;
Zhao, Dazhe ;
Zaiane, Osmar .
BRAIN INFORMATICS, BI 2017, 2017, 10654 :202-212
[23]   Locally linear embedding (LLE) for MRI based Alzheimer's disease classification [J].
Liu, Xin ;
Tosun, Duygu ;
Weiner, Michael W. ;
Schuff, Norbert .
NEUROIMAGE, 2013, 83 :148-157
[24]   Discriminative deep belief networks for visual data classification [J].
Liu, Yan ;
Zhou, Shusen ;
Chen, Qingcai .
PATTERN RECOGNITION, 2011, 44 (10-11) :2287-2296
[25]   A large-scale flight multi-objective assignment approach based on multi-island parallel evolution algorithm with cooperative coevolutionary [J].
Lu, Renli ;
Guan, Xiangmin ;
Li, Xueyuan ;
Hwang, Inseok .
SCIENCE CHINA-INFORMATION SCIENCES, 2016, 59 (07)
[26]   Speech bottleneck feature extraction method based on overlapping group lasso sparse deep neural network [J].
Luo, Yuan ;
Liu, Yu ;
Zhang, Yi ;
Yue, Congcong .
SPEECH COMMUNICATION, 2018, 99 :56-61
[27]   FDG PET Parkinson's disease-related pattern as a biomarker for clinical trials in early stage disease [J].
Matthews, Dawn C. ;
Lerman, Hedva ;
Lukic, Ana ;
Andrews, Randolph D. ;
Mirelman, Anat ;
Wernick, Miles N. ;
Giladi, Nir ;
Strother, Stephen C. ;
Evans, Karleyton C. ;
Cedarbaum, Jesse M. ;
Even-Sapir, Einat .
NEUROIMAGE-CLINICAL, 2018, 20 :572-579
[28]   Infrared ultraspectral signature classification based on a restricted Boltzmann machine with sparse and prior constraints [J].
Mei, Xiaoguang ;
Ma, Yong ;
Fan, Fan ;
Li, Chang ;
Liu, Chengyin ;
Huang, Jun ;
Ma, Jiayi .
INTERNATIONAL JOURNAL OF REMOTE SENSING, 2015, 36 (18) :4724-4747
[29]   Metabolic Imaging in Parkinson Disease [J].
Meles, Sanne K. ;
Teune, Laura K. ;
de Jong, Bauke M. ;
Dierckx, Rudi A. ;
Leenders, Klaus L. .
JOURNAL OF NUCLEAR MEDICINE, 2017, 58 (01) :23-28
[30]   18F-FDG PET in Parkinsonism: Differential Diagnosis and Evaluation of Cognitive Impairment [J].
Meyer, Philipp T. ;
Frings, Lars ;
Ruecker, Gerta ;
Hellwig, Sabine .
JOURNAL OF NUCLEAR MEDICINE, 2017, 58 (12) :1888-1898