Theoretical and experimental study of polycyclic aromatic compounds as β-tubulin inhibitors

被引:3
作者
Olazaran, Fabian E. [1 ]
Garcia-Perez, Carlos A. [2 ]
Bandyopadhyay, Debasish [3 ]
Balderas-Renteria, Isaias [1 ]
Reyes-Figueroa, Angel D. [4 ]
Henschke, Lars [5 ]
Rivera, Gildardo [2 ]
机构
[1] Univ Autonoma Nuevo Leon, Fac Ciencias Quim, Ave Univ S-N,Ciudad Univ, San Nicolas De Los Garza, Nuevo Leon, Mexico
[2] Inst Politecn Nacl, Ctr Biotecnol Genom, Blvd Maestro S-N, Reynosa 88710, Tamualipas, Mexico
[3] Univ Texas Rio Grande Valley, Dept Chem, 1201 West Univ Dr, Edinburg, TX 78539 USA
[4] Inst Politecn Nacl, Ctr Invest & Estudios Avanzados, Unidad Monterrey, Apodaca 66600, Nuevo Leon, Mexico
[5] Univ Konstanz, Dept Biol, Univ Str 10, D-78457 Constance, Germany
关键词
Virtual screening; Inhibitors; beta-Tubulin; Anticancer; Colchicine; MOLECULAR DOCKING; LACTAM ANALOG; BINDING; IDENTIFICATION; COLCHICINE; COMBRETASTATIN-A4; VISUALIZATION; CONFORMATION; PREDICTION; INSIGHT;
D O I
10.1007/s00894-017-3256-5
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
In this work, through a docking analysis of compounds from the ZINC chemical library on human beta-tubulin using high performance computer cluster, we report new polycyclic aromatic compounds that bind with high energy on the colchicine binding site of beta-tubulin, suggesting three new key amino acids. However, molecular dynamic analysis showed low stability in the interaction between ligand and receptor. Results were confirmed experimentally in in vitro and in vivo models that suggest that molecular dynamics simulation is the best option to find new potential beta-tubulin inhibitors.
引用
收藏
页数:10
相关论文
共 46 条
[1]  
Abolhasani H, 2015, IRAN J PHARM RES, V14, P141
[2]   Pharmacophore model generation for microtubule-stabilizing anti-mitotic agents (MSAAs) against ovarian cancer [J].
Abro, Asma ;
Kulsoom, Saima ;
Riaz, Naveeda .
MEDICINAL CHEMISTRY RESEARCH, 2013, 22 (09) :4322-4330
[3]  
[Anonymous], IJCA P INT C ADV COM
[4]  
[Anonymous], CURRENT PROTOCOLS BI
[5]  
[Anonymous], 2006, CHEM HETEROCYCL COM+
[6]   A TOG:αβ-tubulin Complex Structure Reveals Conformation-Based Mechanisms for a Microtubule Polymerase [J].
Ayaz, Pelin ;
Ye, Xuecheng ;
Huddleston, Patrick ;
Brautigam, Chad A. ;
Rice, Luke M. .
SCIENCE, 2012, 337 (6096) :857-860
[7]   Studies of (-)-Pironetin Binding to α-Tubulin: Conformation, Docking, and Molecular Dynamics [J].
Banuelos-Hernandez, Angel E. ;
Alberto Mendoza-Espinoza, Jose ;
Pereda-Miranda, Rogelio ;
Cerda-Garcia-Rojas, Carlos M. .
JOURNAL OF ORGANIC CHEMISTRY, 2014, 79 (09) :3752-3764
[8]   3,3'-[(1RS, 3SR)-2-Oxocyclohexane1,3-diyl] bis[(3RS, 3′SR)-3-hydroxyindolin-2-one] dihydrate: organic layers of R22 (8), R22 (16) and R66 (40) rings linked by tetrameric water aggregates [J].
Becerra, Diana ;
Insuasty, Braulio ;
Cobo, Justo ;
Glidewell, Christopher .
ACTA CRYSTALLOGRAPHICA SECTION C-CRYSTAL STRUCTURE COMMUNICATIONS, 2013, 69 :1081-+
[9]   Anti-mitotic activity of colchicine and the structural basis for its interaction with tubulin [J].
Bhattacharyya, Bhabatarak ;
Panda, Dulal ;
Gupta, Suvroma ;
Banerjee, Mithu .
MEDICINAL RESEARCH REVIEWS, 2008, 28 (01) :155-183
[10]   Identification of tubulin drug binding sites and prediction of relative differences in binding affinities to tubulin isotypes using digital signal processing [J].
Chen, Ke ;
Huzil, J. Torin ;
Freedman, Holly ;
Ramachandran, Parameswaran ;
Antoniou, Andreas ;
Tuszynski, Jack A. ;
Kurgan, Lukasz .
JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 2008, 27 (04) :497-505