Complete Genome Sequence of Clostridium innocuum Strain LC-LUMC-CI-001, Isolated from a Patient with Recurrent Antibiotic-Associated Diarrhea

被引:8
作者
Cherny, K. E. [1 ,2 ]
Ozer, E. A. [2 ]
Kochan, T. J. [2 ]
Johnson, S. [3 ]
Kociolek, L. K. [1 ,2 ]
机构
[1] Ann & Robert H Lurie Childrens Hosp Chicago, Chicago, IL 60611 USA
[2] Northwestern Univ, Feinberg Sch Med, Chicago, IL 60611 USA
[3] Loyola Univ Chicago, Stritch Sch Med, Maywood, IL USA
来源
MICROBIOLOGY RESOURCE ANNOUNCEMENTS | 2020年 / 9卷 / 28期
基金
美国国家卫生研究院;
关键词
ANNOTATION;
D O I
10.1128/MRA.00365-20
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Here, we report the complete genome sequence of Clostridium innocuum strain LC-LUMC-CI-001. As recently as 2018, C. innocuum was generally considered a benign gastrointestinal microorganism. This strain was isolated from the stool of a patient with recurrent Clostridioides difficile infection-like illnesses.
引用
收藏
页数:2
相关论文
共 9 条
  • [1] Clostridium innocuum is a vancomycin-resistant pathogen that may cause antibiotic-associated diarrhoea
    Chia, J-H
    Wu, T-S
    Wu, T-L
    Chen, C-L
    Chuang, C-H
    Su, L-H
    Chang, H-J
    Lu, C-C
    Kuo, A-J
    Lai, H-C
    Chiu, C-H
    [J]. CLINICAL MICROBIOLOGY AND INFECTION, 2018, 24 (11) : 1195 - 1199
  • [2] Review of Current Literature on the Economic Burden of Clostridium difficile Infection
    Dubberke, Erik R.
    Wertheimer, Albert I.
    [J]. INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY, 2009, 30 (01) : 57 - 66
  • [3] RefSeq: an update on prokaryotic genome annotation and curation
    Haft, Daniel H.
    DiCuccio, Michael
    Badretdin, Azat
    Brover, Vyacheslav
    Chetvernin, Vyacheslav
    O'Neill, Kathleen
    Li, Wenjun
    Chitsaz, Farideh
    Derbyshire, Myra K.
    Gonzales, Noreen R.
    Gwadz, Marc
    Lu, Fu
    Marchler, Gabriele H.
    Song, James S.
    Thanki, Narmada
    Yamashita, Roxanne A.
    Zheng, Chanjuan
    Thibaud-Nissen, Francoise
    Geer, Lewis Y.
    Marchler-Bauer, Aron
    Pruitt, Kim D.
    [J]. NUCLEIC ACIDS RESEARCH, 2018, 46 (D1) : D851 - D860
  • [4] Circlator: automated circularization of genome assemblies using long sequencing reads
    Hunt, Martin
    De Silva, Nishadi
    Otto, Thomas D.
    Parkhill, Julian
    Keane, Jacqueline A.
    Harris, Simon R.
    [J]. GENOME BIOLOGY, 2015, 16
  • [5] Assembly of long, error-prone reads using repeat graphs
    Kolmogorov, Mikhail
    Yuan, Jeffrey
    Lin, Yu
    Pevzner, Pavel A.
    [J]. NATURE BIOTECHNOLOGY, 2019, 37 (05) : 540 - +
  • [6] Fast and accurate short read alignment with Burrows-Wheeler transform
    Li, Heng
    Durbin, Richard
    [J]. BIOINFORMATICS, 2009, 25 (14) : 1754 - 1760
  • [7] Evidence-based review of probiotics for antibiotic-associated diarrhea and Clostridium difficile infections
    McFarland, Lynne V.
    [J]. ANAEROBE, 2009, 15 (06) : 274 - 280
  • [8] NCBI prokaryotic genome annotation pipeline
    Tatusova, Tatiana
    DiCuccio, Michael
    Badretdin, Azat
    Chetvernin, Vyacheslav
    Nawrocki, Eric P.
    Zaslavsky, Leonid
    Lomsadze, Alexandre
    Pruitt, Kimd.
    Borodovsky, Mark
    Ostell, James
    [J]. NUCLEIC ACIDS RESEARCH, 2016, 44 (14) : 6614 - 6624
  • [9] Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
    Walker, Bruce J.
    Abeel, Thomas
    Shea, Terrance
    Priest, Margaret
    Abouelliel, Amr
    Sakthikumar, Sharadha
    Cuomo, Christina A.
    Zeng, Qiandong
    Wortman, Jennifer
    Young, Sarah K.
    Earl, Ashlee M.
    [J]. PLOS ONE, 2014, 9 (11):