Asia-wide phylogeography of wild boar (Sus scrofa) based on mitochondrial DNA and Y-chromosome: Revising the migration routes of wild boar in Asia

被引:35
作者
Choi, Sung Kyoung [1 ,2 ]
Kim, Kyung Seok [1 ,3 ]
Ranyuk, Maryana [4 ]
Babaev, Elmar [5 ]
Voloshina, Inna [6 ]
Bayarlkhagva, Damdingiin [7 ]
Chong, Jong-Ryol [8 ]
Ishiguro, Naotaka [9 ]
Yu, Li [10 ,11 ]
Min, Mi-Sook [1 ]
Lee, Hang [1 ]
Markov, Nickolay [4 ]
机构
[1] Seoul Natl Univ, Coll Vet Med, Conservat Genome Resource Bank Korean Wildlife, Seoul, South Korea
[2] Natl Forens Serv Seoul Inst, Seoul, South Korea
[3] Iowa State Univ, Dept Nat Resource Ecol & Management, Ames, IA USA
[4] Russian Acad Sci, Ural Branch, Inst Plant & Anim Ecol, Ekaterinburg, Russia
[5] Russian Acad Sci, Dagestan Sci Ctr, Caspian Inst Biol Resources, Makhachkala, Russia
[6] Lazovsky State Nat Reserve, Lazo, Primorsky Krai, Russia
[7] Natl Univ Mongolia, Dept Biol, Ulaanbaatar, Mongolia
[8] Korea Univ, Wildlife Res Ctr, Tokyo, Japan
[9] Gifu Univ, Lab Food & Environm Hyg, Vet Med, Gifu, Japan
[10] Yunnan Univ, Lab Conservat & Utilizat Bioresource, Kunming, Yunnan, Peoples R China
[11] Yunnan Univ, Key Lab Microbial Resources, Minist Educ, Kunming, Yunnan, Peoples R China
基金
俄罗斯基础研究基金会;
关键词
POPULATION-GENETICS; SEX IDENTIFICATION; PIG; ORIGIN; DOMESTICATION; DIVERSITY; SOFTWARE; REVEALS; PACKAGE;
D O I
10.1371/journal.pone.0238049
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Genetics of pigs has been well studied in Europe and Asia, but most of previous studies of molecular phylogeny ofSus scrofahave been based on sequences of both wild and domestic forms. In this study we analysed genetic traits ofSus scrofafrom 13 regions in Asia (including previously undisclosed Eastern Caucasus and Trans-Baikal regions) using purely wild boar samples. Mitochondrial control region and Y-chromosome genes (AMELY & USP9Y) were employed to resolve phylogeographic relationships. We discussed spatio-temporal dynamics of wild boar distribution and compared molecular data to morphological and cytogenetic data on wild boar variability and taxonomy. A total of 51 haplotypes were detected in mtDNA control region and five haplotypes were found in combined sequences of Y-chromosome genes. The phylogeography of Asia-wide wild boars supported a hypothesis of migration from South-East Asia to South Asia, followed by migration to East and West Asia. We present a hypothesis about independent dispersal of wild boars into West Asia from South and North-East Asia. Mitochondrial DNA phylogeny generally fits the morphologically based intraspecies taxonomy. Distribution of chromosomal variants of wild boar presently does not show clear correlation with mtDNA clades.
引用
收藏
页数:17
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