Deposit3D: a tool for automating structure depositions to the Protein Data Bank

被引：2

作者：

Badger, J ^{[1
]}

Hendle, J ^{[1
]}

Burley, SK ^{[1
]}

Kissinger, CR ^{[1
]}

机构：

[1] SGX Inc, San Diego, CA 92121 USA

来源：

ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS | 2005年 / 61卷

关键词：

D O I：

10.1107/S1744309105026126

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

Almost all successful protein structure-determination projects in the public sector culminate in a structure deposition to the Protein Data Bank (PDB). In order to expedite the deposition proces, Deposit3D has been developed. This command-line script calculates or gathers all the required structure-deposition information and outputs this data into a mmCIF file for subsequent upload through the RCSB PDB ADIT interface. Deposit3D might be particularly useful for structural genomics pipeline projects because it allows workers involved with various stages of a structure-determination project to pool their different categories of annotation information before starting a deposition session.

引用

页码：818 / 820

页数：3

共 9 条

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