SemMedDB: a PubMed-scale repository of biomedical semantic predications

被引：249

作者：

Kilicoglu, Halil ^{[1
]}

Shin, Dongwook ^{[1
]}

Fiszman, Marcelo ^{[1
]}

Rosemblat, Graciela ^{[1
]}

Rindflesch, Thomas C. ^{[1
]}

机构：

[1] Natl Lib Med, Lister Hill Natl Ctr Biomed Commun, Bethesda, MD 20894 USA

来源：

BIOINFORMATICS | 2012年 / 28卷 / 23期

基金：

美国国家卫生研究院;

关键词：

D O I：

10.1093/bioinformatics/bts591

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

Effective access to the vast biomedical knowledge present in the scientific literature is challenging. Semantic relations are increasingly used in knowledge management applications supporting biomedical research to help address this challenge. We describe SemMedDB, a repository of semantic predications (subject-predicate-object triples) extracted from the entire set of PubMed citations. We propose the repository as a knowledge resource that can assist in hypothesis generation and literature-based discovery in biomedicine as well as in clinical decision-making support.

引用

页码：3158 / 3160

页数：3

共 21 条

[1]

Ahlers CB, 2007, PACIFIC SYMPOSIUM ON BIOCOMPUTING 2007, P209

[2]

Bjorne J., 2010, Proceedings of the 2010 Workshop on Biomedical Natural Language Processing, BioNLP '10, P28

[3]

Bjorne J, 2012, BIONLP P 2012 WORKSH, P82

[4] The Unified Medical Language System (UMLS): integrating biomedical terminology [J].

Bodenreider, O .

NUCLEIC ACIDS RESEARCH, 2004, 32 :D267-D270

[5]

Cohen T., 2012, P 6 INT C Q IN PRESS

[6]

Cohen T, 2010, J BIOMED DISCOV COLL, V5, P21

[7]

Fiszman M., 2007, P WORKSHOP BIONLP 20, P137, DOI DOI 10.3115/1572392.1572417

[8]

Goodwin J. C., 2012, Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW), P232, DOI 10.1109/BIBMW.2012.6470309

[9]

Hristovski D, 2012, CARDIOVASC IN PRESS

[10]

Hristovski Dimitar, 2006, AMIA Annu Symp Proc, P349

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