SemMedDB: a PubMed-scale repository of biomedical semantic predications

被引:234
作者
Kilicoglu, Halil [1 ]
Shin, Dongwook [1 ]
Fiszman, Marcelo [1 ]
Rosemblat, Graciela [1 ]
Rindflesch, Thomas C. [1 ]
机构
[1] Natl Lib Med, Lister Hill Natl Ctr Biomed Commun, Bethesda, MD 20894 USA
基金
美国国家卫生研究院;
关键词
D O I
10.1093/bioinformatics/bts591
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Effective access to the vast biomedical knowledge present in the scientific literature is challenging. Semantic relations are increasingly used in knowledge management applications supporting biomedical research to help address this challenge. We describe SemMedDB, a repository of semantic predications (subject-predicate-object triples) extracted from the entire set of PubMed citations. We propose the repository as a knowledge resource that can assist in hypothesis generation and literature-based discovery in biomedicine as well as in clinical decision-making support.
引用
收藏
页码:3158 / 3160
页数:3
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