Complete genome sequence unveiled cellulose degradation enzymes and secondary metabolic potentials in Streptomyces sp. CC0208

被引:9
作者
Zhang, Hongyu [1 ,2 ,3 ]
Dong, Shirui [1 ]
Lou, Tingting [4 ]
Wang, Suying [1 ]
机构
[1] Tianjin Univ Commerce, Coll Biotechnol & Food Sci, Tianjin Key Lab Food Biotechnol, 409 Guangrong Rd, Tianjin 300134, Peoples R China
[2] Chinese Acad Med Sci, State Key Lab Bioact Subst & Funct Nat Med, Inst Mat Med, Beijing, Peoples R China
[3] Peking Union Med Coll, Beijing, Peoples R China
[4] Tianjin Entry & Exit Inspect & Quarantine Bur, Tianjin, Peoples R China
关键词
biosynthetic gene clusters; cellulose degradation; complete genome sequence; genome mining; LYTIC POLYSACCHARIDE MONOOXYGENASE; FUNCTIONAL-CHARACTERIZATION; BINDING; CHITIN; ANNOTATION; PREDICTION; TOOL;
D O I
10.1002/jobm.201800563
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Marine Streptomyces sp. CC0208 isolated from the Bohai Bay showed high efficiency of cellulose degradation under optimized fermentation parameters. Also, as one of the bioinformatics-based approaches for the discovery of novel natural product and enzyme effectively, genome mining has been developed and applied widely. Herein, we reported the complete genome sequence of Streptomyces sp. CC0208.Whole-genome sequencing analysis revealed a genome size of 9,325,981bp with a linear chromosome, GC content of 70.59% and 8487 protein-coding genes. Abundant genes have predicted functions in antibiotic metabolism and enzymes. A 20 enzymes closely associated with cellulose degradation were discovered. A total of 25 biosynthetic gene clusters (BGCs) of secondary metabolites were identified, including diverse classes of natural products. The availability of genome sequence of Streptomyces sp. CC0208 not only will assist in cracking the mechanism of cellulose degradation but also will provide the insights into the significant secondary metabolic potentials for the production of diverse compound classes based on rational strategies.
引用
收藏
页码:267 / 276
页数:10
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