Microvirga soli sp nov., an alphaproteobacterium isolated from soil

被引:32
作者
Dahal, Ram Hari [1 ]
Kim, Jaisoo [1 ]
机构
[1] Kyonggi Univ, Dept Life Sci, Coll Nat Sci, Suwon 16227, Gyeonggi Do, South Korea
基金
新加坡国家研究基金会;
关键词
GEN; NOV; DEOXYRIBONUCLEIC-ACID; EMENDED DESCRIPTION; BACTERIA;
D O I
10.1099/ijsem.0.001582
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
An aerobic, Gram-stain-negative, catalase-positive and oxidase-negative, non-motile, non-spore-forming, rod-shaped, pinkpigmented bacterium designated strain R491(T) was isolated from soil. Flexirubin-type pigments were absent. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain R491(T) formed a lineage within the family Methylobacteriaceae of the phylum Proteobacteria that was distinct from various species of the genus Microvirga, including Microvirgaaerilata 5420S-16(T) (97.83% 16S rRNA gene sequence similarity), Microvirga zambiensis WSM3693(T) (97.76 %), Microvirga flocculans ATCC BAA-817(T) (97.41 %), and Microvirga lupini Lut6(T), Microvirga subterranea DSM 14364(T), Microvirga vignae BR3299(T), and Microvirga guangxiensis 25B(T) (96.99 %). The major polar lipids of strain R491(T) were phosphatidylcholine, phosphatidylglycerol and phosphatidylethanolamine. The major cellular fatty acids were summed feature 8 (C-18:1 omega 7c and/or C-18:1 omega 6c; 71.2 %), C-16:0 (12.0 %), summed feature 3 (C-16:1 omega 7c and/or C-16:1 omega 6c; 4.7 %), and C-18:0 (4.2 %). The DNA G+C content of strain R491(T) was 61.8 mol%. DNA-DNA hybridization values between strain R491(T) and other members of the genus Microvirga ranged from 27 to 57 %. On the basis of phenotypic, genotypic and phylogenetic analyses, strain R491(T) represents a novel species of the genus Microvirga, for which the name Microvirga soli sp. nov. is proposed. The type strain is R491(T) (= KEMB 9005-408(T) = KACC 18969(T) = NBRC 112417(T)).
引用
收藏
页码:127 / 132
页数:6
相关论文
共 36 条
[1]   Microvirga lupini sp nov., Microvirga lotononidis sp nov and Microvirga zambiensis sp nov are alphaproteobacterial root-nodule bacteria that specifically nodulate and fix nitrogen with geographically and taxonomically separate legume hosts [J].
Ardley, Julie K. ;
Parker, Matthew A. ;
De Meyer, Sofie E. ;
Trengove, Robert D. ;
O'Hara, Graham W. ;
Reeve, Wayne G. ;
Yates, Ron J. ;
Dilworth, Michael J. ;
Willems, Anne ;
Howieson, John G. .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2012, 62 :2579-2588
[2]  
Breznak JA, 2007, Methods for General and Molecular Bacteriology, P309
[3]   METABOLISM OF PHOSPHATIDYLGLYCEROL, PHOSPHATIDYLETHANOLAMINE, AND CARDIOLIPIN OF BACILLUS-STEAROTHERMOPHILUS [J].
CARD, GL .
JOURNAL OF BACTERIOLOGY, 1973, 114 (03) :1125-1137
[4]   Arvibacter flaviflagrans gen. nov., sp nov., isolated from forest soil [J].
Chaudhary, Dhiraj Kumar ;
Kim, Jaisoo .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2016, 66 :4347-4354
[5]   Rhabdobacter roseus gen. nov., sp nov., isolated from soil [J].
Dahal, Ram Hari ;
Kim, Jaisoo .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2016, 66 :308-314
[6]  
DOETSCH R.N., 1981, MANUAL METHODS MICRO, P21, DOI DOI 10.1093/MOLBEV/MSR121
[7]   FLUOROMETRIC DEOXYRIBONUCLEIC ACID DEOXYRIBONUCLEIC ACID HYBRIDIZATION IN MICRODILUTION WELLS AS AN ALTERNATIVE TO MEMBRANE-FILTER HYBRIDIZATION IN WHICH RADIOISOTOPES ARE USED TO DETERMINE GENETIC RELATEDNESS AMONG BACTERIAL STRAINS [J].
EZAKI, T ;
HASHIMOTO, Y ;
YABUUCHI, E .
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1989, 39 (03) :224-229
[8]   EVOLUTIONARY TREES FROM DNA-SEQUENCES - A MAXIMUM-LIKELIHOOD APPROACH [J].
FELSENSTEIN, J .
JOURNAL OF MOLECULAR EVOLUTION, 1981, 17 (06) :368-376
[9]  
FELSENSTEIN J, 1985, EVOLUTION, V39, P783, DOI 10.1111/j.1558-5646.1985.tb00420.x
[10]   TOWARD DEFINING COURSE OF EVOLUTION - MINIMUM CHANGE FOR A SPECIFIC TREE TOPOLOGY [J].
FITCH, WM .
SYSTEMATIC ZOOLOGY, 1971, 20 (04) :406-&