Computational Approaches in Theranostics: Mining and Predicting Cancer Data

被引:20
作者
Cova, Tania F. G. G. [1 ]
Bento, Daniel J. [1 ]
Nunes, Sandra C. C. [1 ]
机构
[1] Univ Coimbra, Coimbra Chem Ctr, Dept Chem, Fac Sci & Technol, P-3004535 Coimbra, Portugal
关键词
cancer; theranostics; nanotherapeutics; imaging; in silico models; modeling; simulation; ENGINEERED MOUSE MODELS; HAIRY-CELL LEUKEMIA; PROSTATE-CANCER; SYSTEMS BIOLOGY; MULTIVARIATE DATA; BREAST-CANCER; TUMOR-GROWTH; IMMUNOTHERAPY; DIAGNOSIS; METABOLOMICS;
D O I
10.3390/pharmaceutics11030119
中图分类号
R9 [药学];
学科分类号
1007 ;
摘要
The ability to understand the complexity of cancer-related data has been prompted by the applications of (1) computer and data sciences, including data mining, predictive analytics, machine learning, and artificial intelligence, and (2) advances in imaging technology and probe development. Computational modelling and simulation are systematic and cost-effective tools able to identify important temporal/spatial patterns (and relationships), characterize distinct molecular features of cancer states, and address other relevant aspects, including tumor detection and heterogeneity, progression and metastasis, and drug resistance. These approaches have provided invaluable insights for improving the experimental design of therapeutic delivery systems and for increasing the translational value of the results obtained from early and preclinical studies. The big question is: Could cancer theranostics be determined and controlled in silico? This review describes the recent progress in the development of computational models and methods used to facilitate research on the molecular basis of cancer and on the respective diagnosis and optimized treatment, with particular emphasis on the design and optimization of theranostic systems. The current role of computational approaches is providing innovative, incremental, and complementary data-driven solutions for the prediction, simplification, and characterization of cancer and intrinsic mechanisms, and to promote new data-intensive, accurate diagnostics and therapeutics.
引用
收藏
页数:28
相关论文
共 175 条
[1]   Decoding tumour phenotype by noninvasive imaging using a quantitative radiomics approach [J].
Aerts, Hugo J. W. L. ;
Velazquez, Emmanuel Rios ;
Leijenaar, Ralph T. H. ;
Parmar, Chintan ;
Grossmann, Patrick ;
Cavalho, Sara ;
Bussink, Johan ;
Monshouwer, Rene ;
Haibe-Kains, Benjamin ;
Rietveld, Derek ;
Hoebers, Frank ;
Rietbergen, Michelle M. ;
Leemans, C. Rene ;
Dekker, Andre ;
Quackenbush, John ;
Gillies, Robert J. ;
Lambin, Philippe .
NATURE COMMUNICATIONS, 2014, 5
[2]   Employing dynamical computational models for personalizing cancer immunotherapy [J].
Agur, Zvia ;
Halevi-Tobias, Karin ;
Kogan, Yuri ;
Shlagman, Ofer .
EXPERT OPINION ON BIOLOGICAL THERAPY, 2016, 16 (11) :1373-1385
[3]   A Machine Learning Approach for the Classification of Kidney Cancer Subtypes Using miRNA Genome Data [J].
Ali, Ali Muhamed ;
Zhuang, Hanqi ;
Ibrahim, Ali ;
Rehman, Oneeb ;
Huang, Michelle ;
Wu, Andrew .
APPLIED SCIENCES-BASEL, 2018, 8 (12)
[4]   PharmGKB: a logical home for knowledge relating genotype to drug response phenotype [J].
Altman, Russ B. .
NATURE GENETICS, 2007, 39 (04) :426-426
[5]   Deep learning for computational biology [J].
Angermueller, Christof ;
Parnamaa, Tanel ;
Parts, Leopold ;
Stegle, Oliver .
MOLECULAR SYSTEMS BIOLOGY, 2016, 12 (07)
[6]  
[Anonymous], J BREATH RES
[7]   Using Machine Learning Algorithms for Breast Cancer Risk Prediction and Diagnosis [J].
Asri, Hiba ;
Mousannif, Hajar ;
Al Moatassime, Hassan ;
Noel, Thomas .
7TH INTERNATIONAL CONFERENCE ON AMBIENT SYSTEMS, NETWORKS AND TECHNOLOGIES (ANT 2016) / THE 6TH INTERNATIONAL CONFERENCE ON SUSTAINABLE ENERGY INFORMATION TECHNOLOGY (SEIT-2016) / AFFILIATED WORKSHOPS, 2016, 83 :1064-1069
[8]   Computational Design of an RF Controlled Theranostic Model for Evaluation of Tissue Biothermal Response [J].
Awojoyogbe, Bamidele Omotayo ;
Dada, Michael Oluwaseun .
JOURNAL OF MEDICAL AND BIOLOGICAL ENGINEERING, 2018, 38 (06) :993-1013
[9]   Prediction of signaling cross-talks contributing to acquired drug resistance in breast cancer cells by Bayesian statistical modeling [J].
Azad, A. K. M. ;
Lawen, Alfons ;
Keith, Jonathan M. .
BMC SYSTEMS BIOLOGY, 2015, 9
[10]   Immunotherapy with interleukin-2: A study based on mathematical modeling [J].
Banerjee, Sandip .
INTERNATIONAL JOURNAL OF APPLIED MATHEMATICS AND COMPUTER SCIENCE, 2008, 18 (03) :389-398