Single-Protein Collapse Determines Phase Equilibria of a Biological Condensate

被引:36
作者
Chou, Han-Yi [1 ]
Aksimentiev, Aleksei [1 ]
机构
[1] Univ Illinois, Dept Phys, Urbana, IL 61801 USA
基金
美国国家科学基金会; 美国国家卫生研究院;
关键词
POLYMER-SOLUTIONS; SEPARATION; FUS; SIMULATIONS; MUTATIONS; GRANULES; BEHAVIOR; DILUTE; DOMAIN;
D O I
10.1021/acs.jpclett.0c01222
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Recent advances in microscopy of living cells have established membraneless organelles as critical elements of diverse biological processes. The body of experimental work suggests that formation of such organelles is driven by liquid-liquid phase separation, a physical process that has been studied extensively for both simple liquids and mixtures of polymers. Here, we combine molecular dynamics simulations with polymer theory to show that the thermodynamic behavior of one particular biomolecular condensate-fused in sarcoma (FUS)-can be quantitatively accounted for at the level of the chain collapse theory. First, we show that a particle-based molecular dynamics model can reproduce known phase separation properties of a FUS condensate, including its critical concentration and susceptibility to mutations. Next, we obtain a polymer physics representation of a FUS condensate by examining the behavior of a single FUS protein as a function of temperature. We use the chain collapse theory to determine the thermodynamic properties of the condensate and to characterize changes in the single-chain conformation at the onset of phase separation. Altogether, our findings suggest that the phase behavior of FUS condensates can be explained by the properties of individual FUS proteins and that the change in the FUS conformation is the main force driving for the phase separation.
引用
收藏
页码:4923 / 4929
页数:7
相关论文
共 44 条
[1]   Biomolecular condensates: organizers of cellular biochemistry [J].
Banani, Salman F. ;
Lee, Hyun O. ;
Hyman, Anthony A. ;
Rosen, Michael K. .
NATURE REVIEWS MOLECULAR CELL BIOLOGY, 2017, 18 (05) :285-298
[2]   Germline P Granules Are Liquid Droplets That Localize by Controlled Dissolution/Condensation [J].
Brangwynne, Clifford P. ;
Eckmann, Christian R. ;
Courson, David S. ;
Rybarska, Agata ;
Hoege, Carsten ;
Gharakhani, Joebin ;
Juelicher, Frank ;
Hyman, Anthony A. .
SCIENCE, 2009, 324 (5935) :1729-1732
[3]   Residue-by-Residue View of In Vitro FUS Granules that Bind the C-Terminal Domain of RNA Polymerase II [J].
Burke, Kathleen A. ;
Janke, Abigail M. ;
Rhine, Christy L. ;
Fawzi, Nicolas L. .
MOLECULAR CELL, 2015, 60 (02) :231-241
[4]   Synchronization dependent on spatial structures of a mesoscopic whole-brain network [J].
Choi, Hannah ;
Mihalas, Stefan .
PLOS COMPUTATIONAL BIOLOGY, 2019, 15 (04)
[5]   Physical Principles Underlying the Complex Biology of Intracellular Phase Transitions [J].
Choi, Jeong-Mo ;
Holehouse, Alex S. ;
Pappu, Rohit V. .
ANNUAL REVIEW OF BIOPHYSICS, VOL 49, 2020, 2020, 49 :107-133
[6]   Fluorescence correlation spectroscopy shows that monomeric polyglutamine molecules form collapsed structures in aqueous solutions [J].
Crick, Scott L. ;
Jayaraman, Murali ;
Frieden, Carl ;
Wetzel, Ronald ;
Pappu, Rohit V. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (45) :16764-16769
[7]   A Lattice Model of Charge-Pattern-Dependent Polyampholyte Phase Separation [J].
Das, Suman ;
Eisen, Adam ;
Lin, Yi-Hsuan ;
Chan, Hue Sun .
JOURNAL OF PHYSICAL CHEMISTRY B, 2018, 122 (21) :5418-5431
[8]   Relation between single-molecule properties and phase behavior of intrinsically disordered proteins [J].
Dignon, Gregory L. ;
Zheng, Wenwei ;
Best, Robert B. ;
Kim, Young C. ;
Mittal, Jeetain .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2018, 115 (40) :9929-9934
[9]   Sequence determinants of protein phase behavior from a coarse-grained model [J].
Dignon, Gregory L. ;
Zheng, Wenwei ;
Kim, Young C. ;
Best, Robert B. ;
Mittal, Jeetain .
PLOS COMPUTATIONAL BIOLOGY, 2018, 14 (01)
[10]   Thermodynamically driven assemblies and liquid-liquid phase separations in biology [J].
Falahati, Hanieh ;
Haji-Akbari, Amir .
SOFT MATTER, 2019, 15 (06) :1135-1154