Understanding the pKa of Redox Cysteines: The Key Role of Hydrogen Bonding

被引:188
作者
Roos, Goedele [1 ,2 ,3 ]
Foloppe, Nicolas
Messens, Joris [1 ,2 ,3 ]
机构
[1] Vrije Univ Brussel, Struct Biol Brussels, B-1050 Brussels, Belgium
[2] VIB, Dept Biol Struct, Brussels, Belgium
[3] Brussels Ctr Redox Biol, Brussels, Belgium
关键词
ESCHERICHIA-COLI THIOREDOXIN; GLUTATHIONE-S-TRANSFERASE; ACTIVE-SITE CYSTEINE; ALPHA-HELIX DIPOLE; PROTEIN DISULFIDE-ISOMERASE; PI258 ARSENATE REDUCTASE; CATALYTIC MECHANISM; IONIZABLE GROUPS; ELECTROSTATIC INTERACTIONS; MOLECULAR-DYNAMICS;
D O I
10.1089/ars.2012.4521
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Many cellular functions involve cysteine chemistry via thiol-disulfide exchange pathways. The nucleophilic cysteines of the enzymes involved are activated as thiolate. A thiolate is much more reactive than a neutral thiol. Therefore, determining and understanding the pK(a)s of functional cysteines are important aspects of biochemistry and molecular biology with direct implications for redox signaling. Here, we describe the experimental and theoretical methods to determine cysteine pK(a) values, and we examine the factors that control these pK(a)s. Drawing largely on experience gained with the thioredoxin superfamily, we examine the roles of solvation, charge-charge, helix macrodipole, and hydrogen bonding interactions as pK(a)-modulating factors. The contributions of these factors in influencing cysteine pK(a)s and the associated chemistry, including the relevance for the reaction kinetics and thermodynamics, are discussed. This analysis highlights the critical role of direct hydrogen bonding to the cysteine sulfur as a key factor modulating the equilibrium between thiol S-H and thiolate S-. This role is easily understood intuitively and provides a framework for biochemical functional insights. Antioxid. Redox Signal. 18, 94-127.
引用
收藏
页码:94 / 127
页数:34
相关论文
共 196 条
[1]  
ADMAN E, 1975, P NATL ACAD SCI USA, V72, P4854, DOI 10.1073/pnas.72.12.4854
[2]   Incorporating protein conformational flexibility into the calculation of pH-dependent protein properties [J].
Alexov, EG ;
Gunner, MR .
BIOPHYSICAL JOURNAL, 1997, 72 (05) :2075-2093
[3]   Progress in the prediction of pKa values in proteins [J].
Alexov, Emil ;
Mehler, Ernest L. ;
Baker, Nathan ;
Baptista, Antonio M. ;
Huang, Yong ;
Milletti, Francesca ;
Nielsen, Jens Erik ;
Farrell, Damien ;
Carstensen, Tommy ;
Olsson, Mats H. M. ;
Shen, Jana K. ;
Warwicker, Jim ;
Williams, Sarah ;
Word, J. Michael .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2011, 79 (12) :3260-3275
[4]  
[Anonymous], 1999, IUCR MONOGRAPHS CRYS
[5]  
[Anonymous], 1994, HDB CHEM PHYS, V75th
[6]   The determinants of pK(a)s in proteins [J].
Antosiewicz, J ;
McCammon, JA ;
Gilson, MK .
BIOCHEMISTRY, 1996, 35 (24) :7819-7833
[7]   PREDICTION OF PH-DEPENDENT PROPERTIES OF PROTEINS [J].
ANTOSIEWICZ, J ;
MCCAMMON, JA ;
GILSON, MK .
JOURNAL OF MOLECULAR BIOLOGY, 1994, 238 (03) :415-436
[8]   DIPOLES LOCALIZED AT HELIX TERMINI OF PROTEINS STABILIZE CHARGES [J].
AQVIST, J ;
LUECKE, H ;
QUIOCHO, FA ;
WARSHEL, A .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1991, 88 (05) :2026-2030
[9]   Structure, catalytic mechanism, and evolution of the glutathione transferases [J].
Armstrong, RN .
CHEMICAL RESEARCH IN TOXICOLOGY, 1997, 10 (01) :2-18
[10]   Redox potentials of glutaredoxins and other thiol-disulfide oxidoreductases of the thioredoxin superfamily determined by direct protein-protein redox equilibria [J].
Åslund, F ;
Berndt, KD ;
Holmgren, A .
JOURNAL OF BIOLOGICAL CHEMISTRY, 1997, 272 (49) :30780-30786