Circ_Lrp6, a Circular RNA Enriched in Vascular Smooth Muscle Cells, Acts as a Sponge Regulating miRNA-145 Function

被引:173
作者
Hall, Ignacio Fernando [1 ,2 ]
Climent, Montserrat [1 ]
Quintavalle, Manuela [1 ]
Farina, Floriana Maria [1 ]
Schorn, Tilo [1 ]
Zani, Stefania [1 ,2 ]
Carullo, Pierluigi [1 ,2 ,3 ]
Kunderfranco, Paolo [1 ]
Civilini, Efrem [1 ,2 ]
Condorelli, Gianluigi [1 ,2 ,3 ]
Elia, Leonardo [1 ,3 ,4 ]
机构
[1] Humanitas Res Hosp, Milan, Italy
[2] Humanitas Univ, Milan, Italy
[3] CNR, Inst Genet & Biomed Res, Milan, Italy
[4] Univ Brescia, Dept Mol & Translat Med, Viale Europa 11, I-25123 Brescia, Italy
基金
欧洲研究理事会;
关键词
alternative splicing; circular RNA; epigenomics; gene expression; microRNAs; smooth muscle cells; vascular diseases; ENDOTHELIAL-CELLS; IN-VIVO; ATHEROSCLEROSIS; IDENTIFICATION; EXPRESSION; SEQUENCES; ABUNDANT; HYPOXIA; GROWTH; BETA;
D O I
10.1161/CIRCRESAHA.118.314240
中图分类号
R5 [内科学];
学科分类号
1002 ; 100201 ;
摘要
Rationale: microRNAs (miRNAs) modulate gene expression by repressing translation of targeted genes. Previous work has established a role for miRNAs in regulating vascular smooth muscle cell (VSMC) activity. Whether circular RNAs are involved in the modulation of miRNA activity in VSMCs is unknown. Objective: We aimed to identify circular RNAs interacting with miRNAs enriched in VSMCs and modulating the cells' activity. Methods and Results: RNA sequencing and bioinformatics identified several circular RNAs enriched in VSMCs; however, only one, possessing multiple putative binding sites for miR-145, was highly conserved between mouse and man. This circular RNA gemmed from alternative splicing of Lrp6 (lipoprotein receptor 6), a gene highly expressed in vessels and implicated in vascular pathologies and was thus named circ_Lrp6. Its role as a miR-145 sponge was confirmed by determining reciprocal interaction through RNA immunoprecipitation, stimulated emission depletion microscopy, and competitive luciferase assays; functional inhibition of miR-145 was assessed by measuring expression of the target genes ITG beta 8 (integrin-beta 8), FASCIN (fascin actin-bundling protein 1), KLF4 (Kruppel-like factor 4), Yes1 (YES proto-oncogene 1), and Lox (lysyl oxidase). The interaction was preferentially localized to P-bodies, sites of mRNA degradation. Using loss-and gain-of-function approaches, we found that circ_Lrp6 hindered miR-145-mediated regulation of VSMC migration, proliferation, and differentiation. Differential expression of miR-145 and circ_Lrp6 in murine and human vascular diseases suggests that the ratio of circ_Lrp6 bound to miR-145 versus unbound could play a role in vascular pathogenesis. Viral delivery of circ_Lrp6 shRNA prevented intimal hyperplasia in mouse carotids. Conclusions: circ_Lrp6 is an intracellular modulator and a natural sponge for miR-145, counterbalancing the functions of the miRNA in VSMCs.
引用
收藏
页码:498 / 510
页数:13
相关论文
共 62 条
[1]   A Micropeptide Encoded by a Putative Long Noncoding RNA Regulates Muscle Performance [J].
Anderson, Douglas M. ;
Anderson, Kelly M. ;
Chang, Chi-Lun ;
Makarewich, Catherine A. ;
Nelson, Benjamin R. ;
McAnally, John R. ;
Kasaragod, Prasad ;
Shelton, John M. ;
Liou, Jen ;
Bassel-Duby, Rhonda ;
Olson, Eric N. .
CELL, 2015, 160 (04) :595-606
[2]   Smooth Muscle Enriched Long Noncoding RNA (SMILR) Regulates Cell Proliferation [J].
Ballantyne, Margaret D. ;
Pinel, Karine ;
Dakin, Rachel ;
Vesey, Alex T. ;
Diver, Louise ;
Mackenzie, Ruth ;
Garcia, Raquel ;
Welsh, Paul ;
Sattar, Naveed ;
Hamilton, Graham ;
Joshi, Nikhil ;
Dweck, Marc R. ;
Miano, Joseph M. ;
McBride, Martin W. ;
Newby, David E. ;
McDonald, Robert A. ;
Baker, Andrew H. .
CIRCULATION, 2016, 133 (21) :2050-2065
[3]   Identification and Characterization of Hypoxia-Regulated Endothelial Circular RNA [J].
Boeckel, Jes-Niels ;
Jae, Nicolas ;
Heumueller, Andreas W. ;
Chen, Wei ;
Boon, Reinier A. ;
Stellos, Konstantinos ;
Zeiher, Andreas M. ;
John, David ;
Uchida, Shizuka ;
Dimmeler, Stefanie .
CIRCULATION RESEARCH, 2015, 117 (10) :884-890
[4]   Acquisition of the contractile phenotype by murine arterial smooth muscle cells depends on the Mir143/145 gene cluster [J].
Boettger, Thomas ;
Beetz, Nadine ;
Kostin, Sawa ;
Schneider, Johanna ;
Krueger, Marcus ;
Hein, Lutz ;
Braun, Thomas .
JOURNAL OF CLINICAL INVESTIGATION, 2009, 119 (09) :2634-2647
[5]   Specific identification and quantification of circular RNAs from sequencing data [J].
Cheng, Jun ;
Metge, Franziska ;
Dieterich, Christoph .
BIOINFORMATICS, 2016, 32 (07) :1094-1096
[6]   TGFβ Triggers miR-143/145 Transfer From Smooth Muscle Cells to Endothelial Cells, Thereby Modulating Vessel Stabilization [J].
Climent, Montserrat ;
Quintavalle, Manuela ;
Miragoli, Michele ;
Chen, Ju ;
Condorelli, Gianluigi ;
Elia, Leonardo .
CIRCULATION RESEARCH, 2015, 116 (11) :1753-+
[7]   microRNAs in Cardiovascular Diseases Current Knowledge and the Road Ahead [J].
Condorelli, Gianluigi ;
Latronico, Michael V. G. ;
Cavarretta, Elena .
JOURNAL OF THE AMERICAN COLLEGE OF CARDIOLOGY, 2014, 63 (21) :2177-2187
[8]   miR-145 and miR-143 regulate smooth muscle cell fate and plasticity [J].
Cordes, Kimberly R. ;
Sheehy, Neil T. ;
White, Mark P. ;
Berry, Emily C. ;
Morton, Sarah U. ;
Muth, Alecia N. ;
Lee, Ting-Hein ;
Miano, Joseph M. ;
Ivey, Kathryn N. ;
Srivastava, Deepak .
NATURE, 2009, 460 (7256) :705-U80
[9]   A genome-wide survey demonstrates widespread non-linear mRNA in expressed sequences from multiple species [J].
Dixon, RJ ;
Eperon, IC ;
Hall, L ;
Samani, NJ .
NUCLEIC ACIDS RESEARCH, 2005, 33 (18) :5904-5913
[10]   STAR: ultrafast universal RNA-seq aligner [J].
Dobin, Alexander ;
Davis, Carrie A. ;
Schlesinger, Felix ;
Drenkow, Jorg ;
Zaleski, Chris ;
Jha, Sonali ;
Batut, Philippe ;
Chaisson, Mark ;
Gingeras, Thomas R. .
BIOINFORMATICS, 2013, 29 (01) :15-21